RNA id: XM_022674069.1


Basic Information

Item Value
RNA id XM_022674069.1
length 3039
RNA type mRNA
GC content 0.47
exon number 19
gene id cog7
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 840868 ~ 864588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTTTCACCCGAACGCGACAACATAGGGCACACCCCGGACCCTGGCTCTGTAAACATCAGCTGCGTTAGCTtctgtttctgtgattttgggagattttaaagtttatttttcaaACGGTAAAGCGCAGTTTAACGCTGGAGGAGGCGGTCGCGCTGCTGGAGCTGTACCTGGTTGTTATGGTGATTTCTTTCTCCTGGGCTGTTTATTTTCTCTTCGTGTCTAAACCAGGAATAGGGAAGAACTACAGGGTGGACTGAGGAGCTCTTCAGCTGCAGGTTTTTGAGATGGAACAGCTGAGGTAGCTAGTGGTTTCCAGTTTAAAGCTTTAAACATGGACTTCTCAAAGTTTCTTGCGGATGATTTCGATGTGAAGGATTGGGTGAATGGCGCATTTAAAGTGGCGCAGCAAGAAGCGCCTGGAAGAGCTGATGCGCATGCAGCGACTCTCGTCATGAAGCTTCAGCTGTTTATTCAAGAAGTTAACAACTCGATAGAAGagaGCAGCATTCAGGCCCTGCAAAACATGCCACGCGTGTTGAGGGATATAGAGGCTCTGAAGCAAGAGGCTTCGTTCCTGAAGGATCAGATGACTATGGTGAAAGAAGACATCAAAAAGTTTGAACAGGACACACTGCAGTCCATGCAGGTGCTGGTGGAGATTGATCAAGTGAAGTCTAGGATGCAGTTAGCAGCTGAGGCTCTACAGGAAGCAGATAAATGGAGCACGCTTAGCGCTGACATTGAGGAGACGTTCAagacacagGATGTGGCTGTGATCAGCAGTAAGTTGGCAGCGATGCAGAGCAGTCTGGCCATGCTGGTGGATACTCCAGACTACAGCGAGAAGTGTGTGCAGCTGGAGGCTCTCAAAAATAGACTTGAGGCTCTCGCCAGCCCTCAGATAGTCTCTACTTTTAACACACTCTCTACAGATCAAGCCAAGCTGTTTGTGCGAGTTTTCACAGAAATAGACAGAATGCCTCAGCTATTGGCTTACTACTATAAGTGCCACAAGGTGCAGCTGCTGAATGTGTGGGAGAGTGTGTGTCAGTCTGACGCTCCTCTACAGCAGCAGCTCTCAGAGTTTTATGACACACTCCTCTCAACTTGGCACACACAGTTACAGTGGACTGGCCAgGTCTTTAAAAACCCCTATGAGGTGGTGACCGTACTGATGATCCAAACTCTGGGTGCCATGGTTCCATCCATCCCAGACAGCATTGCAGCAGCACTAGAATGCTGCCCTGCTGAGGGCCGTCTGGAGACAATCCTGGAACTCCATCAGACAGCTGCCAACTTCAGCCGCAGCCTGGAAACTGCAATGCAGCCGCACCTCAGTGAGTGTAACCTTTTGAAGGTGTGTGAACTGGTGTCGTGTGTGTATTCACcatataaaagttatcagcTGCAGTATGGAGAACTAGAGGAGACCAACCTACTGATCCAACTCAGTGCTGTACCACTGGAGCGTGGGGAGGTCTTGGATTGTGTGCTGGAGCTCACACACTCTGTACAGAAGGTGTTTGGCCTGGCAGCCGCTGCTGTGGATCGCTGTGTAAAACTTACAGATGGACTGGGAGTGTGTGGCCTCATCAAAGCTCTTCGTGCACTGTTCAGCAAATATGTGTCAGATTTCTCTGTCactcttcagtcaatcagaaagAAGTATAAATTTGAGGAAGCCCCTACCTCTGAAGTGTTCACTGAGGATTGGACAGCTTTCCAGAATTCTGTCAGGATAATTGCTACCTGTGGGGAGCTTCTCAGACAGTGTGGGGCTTTTGAGCAGCAGCTTTCAAACAAGATTCTTGGAAAGGCAGGGCGATTTCTGTGGGAGGGGTTTAACCCAAGAAGTCTGAGCGGTCTGCAAGAGGGTGGAGCTGAGAGACGGGGCCAGAAGAACCCATGGCAGGAATATAATTacctgcagcagagcagcatgGCGGAGTACAATAATCTGCTGGAAACTCTGCACACCCTCAAGGAGAAAGGCACTGGAAACTCCAGCCTGCTGTCTGAGACTCGTGCTGCTCTGACCCGTCTGAACCAGCAGGCCAATCAGCTCGCCTTTGACTCTGTGTTTCTGCAAATCAAACACCAGCTCTGCCTCGCCAATAAGCCAGAGTTTCGGGGTTCTGCTGGTCTGGGtgaaacactgaatgaaaacCTACCAACCTTCAGTCTCTCGCCACAGGAGTACATTACTAACATTGGGCAGTATATCATGTCTCTTCCACTGCATTTGGAGCCATTTGTGACCCAGGAGGACCCAGCACTGGAACTGGCCTTACACACAGGAAAACTACCATATCCACCTGAGCAAGGTGATGGTCCGGAGCTGGAGAACACAGCAGATTATTGGCTGGGTTCAATAGCCAGGGCGACCATGCAGACATACTGTGATGTTATTCTGCAGATTCAGGAGCTGAATCCGCATTCAACAAAACAACTGGCTACTGATATCGattacCTAAGCAATGTAATGGATGCACTGGGGCTGCAAACATCTAGAACTCTCCAGAACATCACCACTCTTCTCCGGGCCAAACCTGAAGAATTTCGCCAGACTGCCAAACCCTTGCCCCGCAGACTGTCCTCCACCGTTGCTGCCATGCGGGGCATTGAgtactaaaaaaacaacagagattttctctttcatttgtttttccttttttttttcctgtctgaACCGTGGCCTCTGCATGCTTTATCAGCAAACTCTCTTTCTTAATTATACAGAAATGTCAGCTGaccaatttttttaaagttgtctAACAGATGTGAGTGATGAGGGGTGAAATATAACTGTGCTGATGggtgatataatataatatctatgtgaaataaattttatttgagTGAATCTGTAGATGCAGTTTGGGAGTTTGTTCATTTATGTGGAGATAAAGCAGGATCTCTGTGGTTTGGGAACACTAGCTTCTCtactgtgtctgtctctctttgctCTGCTGTTACTGGATTTCCTTTTTCATATTTatgaactaaataaacaaacacttgTTTGTGTTTACAGTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20294 COG7; conserved oligomeric Golgi complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129515 lncRNA upstream 4766 835482 ~ 836102 (+) True G96132
TU129500 lncRNA upstream 31338 809321 ~ 809530 (+) True G96124
TU129490 lncRNA upstream 97129 736741 ~ 743739 (+) True G96116
TU129424 lncRNA upstream 254756 585905 ~ 586112 (+) True G96073
TU129412 lncRNA upstream 262037 578494 ~ 578831 (+) True G96061
TU129703 lncRNA downstream 476973 1341561 ~ 1391532 (+) True G96281
TU129704 lncRNA downstream 479449 1344037 ~ 1344448 (+) True G96282
TU129710 lncRNA downstream 500196 1364784 ~ 1456887 (+) True G96286
TU129694 lncRNA downstream 517837 1382425 ~ 1421881 (+) True G96273
TU129713 lncRNA downstream 527420 1392008 ~ 1392358 (+) True G96289
XM_022674067.1 mRNA upstream 32320 799224 ~ 808548 (+) False LOC103040575
XM_022674068.1 mRNA upstream 32320 799738 ~ 808548 (+) False LOC103040575
XM_022674065.1 mRNA upstream 45325 777829 ~ 795543 (+) True LOC111193407
XM_022674066.1 mRNA upstream 45325 777845 ~ 795543 (+) False LOC111193407
XM_022674063.1 mRNA upstream 64380 753085 ~ 776488 (+) False LOC103033547
XM_022674033.1 mRNA downstream 155546 1020134 ~ 1209397 (+) True nlrc3
XM_007256809.3 mRNA downstream 359588 1224176 ~ 1271502 (+) True wdr90
XM_022674080.1 mRNA downstream 413196 1277784 ~ 1302779 (+) False rhot2
XM_022674079.1 mRNA downstream 413197 1277785 ~ 1302779 (+) True rhot2
XM_022674081.1 mRNA downstream 413201 1277789 ~ 1302779 (+) False rhot2
TU129495 other upstream 32294 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 79285 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3000402 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4101112 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4101112 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 4101112 4965700 ~ 4967968 (+) False ndufaf6

Expression Profile