RNA id: XM_022674109.1


Basic Information

Item Value
RNA id XM_022674109.1
length 3863
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC103036916
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2242170 ~ 2495068 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccctcactcttacatacacacacgcgcgcTGCCTCGCTTcagcctcactctctctcttgcttgcttGCGCGCCAGTCCAACATGTTGCCTGCGCGATGCTGCGCTCCAAAGTGGAAAGCGTCCTGCCGGTGTCCCGGCAGAGCTGCGGCACCGCCGCCCGAGCTGGCGCGCTGCATCTGAAAGAGCTctgcgaggaggaggaggataaCCAGCCCAAGGCCCCCTcgcctgctgtgtccatgtggAGGGGGGCAATGCGCGGGAGGCGCTACCTGCTGGAGCGGGGCAGCTTGCCCGGGACGGGCAGCACTGGTGGAGTGACCGGAGGAGGCGGCCGGAGGCAGAGGTCGCCCGACTGGCTGTACGAGTCGTACTGCCGCATGAGCCAACAGCACCCGCTCATCGTCTTTCTGCTGTTGATAGTGATGGGTGCCTGCCTGGCACTGCTGGCTGTCTTCTTCGCCTCTGGACTGGATATCGAGGCTCACGTCGCCTTCGTGATCACCGTCCCGACGGCGCTTGCCATTTTTCTCAGTATCTTTGTCCTGGTCTGCATTGAGTCTGTCTTCAAGAAGCTGCTGCACGTTTTCTCCTTAGTGATCTGGGCCTGTCTGGTTGCCATGGGTTACCTCTTCATGTTTTTCGGAGGCATCATCTGTCCCTGGGATCAGGTGTCCTTCTTCTTGTTCATCATCTTCGTGGTGTACACCATGCTCCCGTTCTCCATGAAGGATGCCATCATAGCCAGCGTGGTCACCTGCTCGTCTCACACTGTGGTCCTGAGTGTGTGCCTGTCGTCCGGCGGCGAGCGAGCAGAGCCGTTAGTGTGGCAGATTTTGGCCAACATCATCATTTTCATCTGTGGGAACATGGCAGGAGCGTATCACAAACACCTGATGGAGCTGGCTCTTAAACAGACCTACCACGACACCTGCAACTGCATCAAGTCACCCATCAAGCTGGAGTTCGAGAAGCGCCAGCAGGAGCGTCtgctgctgtctctgctgccGGCTCACATAGCCCGGGTGATGAAGGCTGAGATTATACAGAGGCTCCAAGGCCCCAATTTCGGCCAAGTAGAGAACACCAACAACTTCCACAATTTATATGTGCAGAGGCACACCAACGTCAGTATTCTGTATGCTGATATTGTTGGCTTCACTCGCTTGGCCAGCGACTGCTCTCCCGGAGAGCTGGTCCACATGCTGAATGAGCTTTTTGGCAAATTTGATCAGATTGCCAAGGAAAATGAATGTATGAGAATCAAGATCCTCGGGGACTGTTATTACTGTGTGTCCGGTCTCCCTGAGTCGTTGCCTAACCATGCcaaaaactgtgtgaaaatggGCCTGGACATGTGTGAGGCCATCAAGAAGGTGCGCGACGCCACCAGCGTGGACATTAACATGCGAGTGGGTGTTCACTCGGGAAACGTGCTCTGCGGCGTCATCGGCCTCCAGAAGTGGCAGTACGACGTCTGGTCACATGACGTGACGCTAGCCAATCACATGGAGGCTGGCGGTGTGCCAGGGCGTGTTCACATTACCTCCGTCACACTGGAGCATCTGAACGGGGCGTATAAAGTAGAGGACGGCTACGGCCAGGAGAGAGATGCCTACCTGAAAGAGCACGGAGTTGTGACTTATCTAGTCATCAACCCAAAGGCTGAGAGGAGGAGTCCCCAGCATCACTACAGGCCACGACACACCATGGAAGGGGCGAAGATGAGAGCATCAGTTAGGATGACCCGATACCTGGAGTCCTGGGGGGCTgccaagcccttcgccaacctGCACCACCGGGACAGCATGACTAATGAGAACGGCAAAATTAACACCGCTgaTGTGCCACTGGGTCAGTATCACTTTCGGAGACGCTCGGAGAGAACGAAGTCTCAGAAGAAGCGATTTGAGGAGGAACTTAATGAAAGGATGATACGAACATTTGATGGCATCAACTCTCAAAAGCAATGGCTCAAATCTGAGGACATTCAGAGAATATCAATGTTTTTTCACAATAAAGCTTTAGAAAAAGAGTACAGAGCAACAACCCTGCCTGCTTTCAAATACTACATCACCTGTGCCTGTTTGATCTTCTTCTGCATTTTCATTGTGCAGATTCTGGTCTTGCCAAAGACTGCTGTACTGGGAATCTCGTTCGGAATGTCCTTCCTCATTCTCTCCATGATTCTGCTCATCTGCTTTATTGGCCATTTCTTGCACTGCAGTAaaacagcatcagcatcatGGCTCTGGATCCTCCGGTCCTCCAGCATCATTGCCAACAAGCCTTGGCCCCGCCTCACActcaccatggcaaccaccacCCTCATCCTAGTAATGGCTGTCTTCAACATGtTCTTTCTGGAGGATAACTTGATACCCAGTGTACCCGTTTATAATACATCCAATGAAACACTACTTCAGCCTGATGGTCGTCCAGTGGCTTTCCTGGAGAAGAGCAGTTTCTACCTTCCTTATTTCATCTACAGCTGCATACTGGGCCTCATCTCCTGTTCTGTGTTTCTGAGAATCAACTACGAGCTGAAGATGCTCATCATGCTGACGGCTGTAGTGGGCTACAACATCATTATACTGGAGACTCATGCTTCTCTCCTGGATGAGTACAGCAAGTTCCTCTACAAGACAGAAGTCCTAGAAAGGCCAGGAGTTCTGAAGGATTTGAAGACAATGGGTTCTGTGTCTCTTTTCATATTCTTCGTCACCCTCCTCGTTCTGGCCAGACAGAATGAATATTACTGTAGGTTGGACTTTCTGTGGAAGAACAAGTTCAAGAAGGAGTGTGAGGAGATCGAGACTATGGAGAACCTGAACCGCGTACTGTTGGAGAACGTTCTACCCGCCCACGTGGCAGAGCACTTCCTGGCCCGAAACTGGAAGAATGAGGATCTATATCACCAGTCGTACGACCTGGTCTGCGTGATGTTCGCGTCGATCCCAGACTTCAAAGAGTTCTACACAGAGTCAGACGTAAACAAGGAAGGCCTCGAGTGTCTCAGACTGCTGAACGAAATCATTGCAGACTTTGATGAGTTGCTGTCCAAGCCCAAGTTTAGTGGAGTTGAGAAAATCAAGACCATTGGAAGCACTTACATGGCAGCCACTGGACTCAACGCCACACCTGAACATGCCCAGGAGCATGATAGGCAGTACATGCACATCGGCACCATGGTGGAGTTCGCCTTTGCGCTGGTGGGGAAGCTGGATGTCATCAATAAACATTCCTTCAACGACTTCAAGCTACGAGTGGGTATTAACCATGGACCTGTTATTGCTGGAGTGATCGGAGCCCAGAAGCCTCAGTACGACATCTGGGGAAACACGGTGAATGTAGCCAGCCGGATGGACAGCACCGGGGTTCTCGGGAAAATACAGGTGACGGAGGAGACCAGCCGGATCTTGCTAGCGCTGGGCTACACGTGTTCCTGCCGAGGGATCATTAACGTCAAAGGGAAAGGAGAACTCAAAACCTACTTTGTTCACACAGAGATGACCAGGTCTCTTTCACAAGGGAATGTAATGCCATGAGCCAGCCAGCCCCCGCCAGCAGTTACTGAAGGAACACgagacatttgtaaatactcTCTCGCCTTTGTCCTTAGATGCACGAGATCTTGGATGTATTTAAAGTGATACCATTTCTGCAGTATCTCATATGCAGAGTTTGTGCACAGGGTACATGTAAGTATGGTAGCAGTTATTTTGTAAGAAAaccaaatataacaaaaaagtgttttgatgttttaacgccattggtttttttttctttctttttttctttttgtaaaaaaaaaaaaaaaaactgacattaaACTTTATATGTACTTTGGTCTTCCGGCCGA

Function

GO: NA

KEGG:

id description
K08042 ADCY2; adenylate cyclase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650513.1 lncRNA upstream 14758 2224582 ~ 2227412 (+) True LOC111193411
TU130040 lncRNA upstream 166216 2075386 ~ 2075954 (+) True G96541
TU130005 lncRNA upstream 227883 2011391 ~ 2014287 (+) True G96520
TU130001 lncRNA upstream 238559 1997871 ~ 2003611 (+) True G96517
TU129926 lncRNA upstream 384275 1810389 ~ 1857895 (+) True G96460
TU130119 lncRNA downstream 301 2495369 ~ 2495929 (+) True G96604
TU130124 lncRNA downstream 6089 2501157 ~ 2503293 (+) True G96609
TU130129 lncRNA downstream 23104 2518172 ~ 2586270 (+) True G96614
TU130187 lncRNA downstream 426401 2921469 ~ 2922174 (+) True G96651
TU130212 lncRNA downstream 612713 3107781 ~ 3108131 (+) True G96663
XM_022674108.1 mRNA upstream 74479 2151917 ~ 2167691 (+) True LOC103036307
XM_007256836.3 mRNA upstream 93432 2126283 ~ 2148738 (+) True ice1
XM_022674107.1 mRNA upstream 93432 2126283 ~ 2148738 (+) False ice1
XM_007256835.3 mRNA upstream 120460 2110877 ~ 2121710 (+) True prpf3
XM_007256834.3 mRNA upstream 156772 2074608 ~ 2085398 (+) True LOC103032920
XM_022674035.1 mRNA downstream 241061 2736129 ~ 3006374 (+) True LOC103037869
XM_007232026.3 mRNA downstream 652301 3147369 ~ 3272603 (+) False cobl
XM_022674120.1 mRNA downstream 652301 3147369 ~ 3272603 (+) False cobl
XM_022674116.1 mRNA downstream 652301 3147369 ~ 3272603 (+) False cobl
XM_022674122.1 mRNA downstream 652301 3147369 ~ 3272603 (+) False cobl
XR_002650511.1 other upstream 1293585 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 1433596 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 1369922 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 2470632 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 2470632 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 2470632 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 2473036 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile