RNA id: XM_022674288.1


Basic Information

Item Value
RNA id XM_022674288.1
length 1961
RNA type mRNA
GC content 0.47
exon number 10
gene id krr1
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8916576 ~ 8926508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAGGGTCGCTGTGAGTCTCACTGCGTTCAAACACGCAGCAGCGCTAAAggaagcagcagaagaagaatcAGCAGTAATGGCGGCGCCCGCAGAGGgcagcgtgagagagagaggcgatCAGAAACTCAACAGAAACAGAACCAGAGCCAACCAGCAGCCCTCCGATGATTTGGAGCTGTTGACTGTTCCGGATGGATGGAAGGAGCCGGAGTTTACGTGGGCGGATAACCCCCGGGGGCTGCTGGAGGAGAGCAGCTTCGCAACCCTCTTCCCCAAATACCGCGAGGCGTATCTGAAGGAGTGCTGGCCGCTGGTGCAGAAAGCTCTCGGAGAGATTTTTATAAATGCTTCACTGGATCTGATTGAGGGCAGCATCACTGTCAGCACCACTAAAAAGACCTTTGACCCGTACGCCATCCTCAGAGCGCGGGACCTCATCAAACTGCTGGCCAGAAGCGTCCCGTTCGAGCAGGCTGTGAGGATTCTGCAGGACGACATGGCGTGCGATATAATAAAGATCGGGACACTGGTGCGGAACAGAGAACGCTTTGTGAAGCGCAGACAGAGACTGATTGGACCTAAAGGCTCTACGCTAAAGGCACTGGAGCTGCTAAGCAACTGCTATGTACTGGTTCAGGGAAACACAGTCTCTGTACTGGGACCCCACAGCGGCCTGAAGGagGTGAGGAAGGTGGTTCTGGACACGATGAAGAATATTCACCCCATTTACAACATCAAGaCCCTGATGATAAAGCGAGAGTTGGCGAGTGATCCTGAGCTGCGCTCTCAGAGCTGGGACAGATTTCTCCCCAAGTTCAAACACAAAAGTCTGGCCAAACGGCAAAAACCCAAAAAGAAGAAGGTTAAGAAGGAGTACACTCCATTCCCTCCACCCCAACCTGAGAGCAAGGTTGATCGTGAGTTGGCGAGTGGAGAGTTCTTTCTGCGGGAGAgcgagaagaggaggaggaaactGAATGAAATCAAGGTGAAGCAGGCTGAAGCTCTGAGCCGAAAACAGGATGAGaggaaaaaagcatttattcCTCCCAGAGAGAAACCGGCCACCAAGAAAACGCCCAAAGCTCCTGCTGAAGAGAAACTGGACATCCAGGCCATTAAGGATAAAGTAAAGAAGGCTAAGAATAAGAAGCTTGGAGCTCCTCCCCAACTGAGCTCTGTGACGCCACCTTTTGACcttgagaagaagaagaaaataacgAAGAGTAAAAGCTGATGCATCTCTGCAGGATGGACTGTTGTTTCTCTAATGGACAAATATGGCAATGGTGGAAAATCCAGGTCCTGAAAGCAAAAATCCATCTATGGACCTGGAGTAACCAACTCTATATTTTGTATGTTATTGATAgatgtttgttgttgttgttgtttttttttttttttttttatgtaaatgttctgatgtgtgttgtgctggtacaagttgattagacacagcagtgttgctggagttttttaacacctcagtaaatatatttatccTTTCCTGTCTTGTGAGCATTGATGAGGGACTAGATGAAAagcaacacaaactgtgcagtcccagattcagagcttctgtctctgactacaTCCACAAGGTGGAGCTACAGGTACTGCTGTGTCAGATCCACTCATGTAACACCACAGCACACCAGCATCATGCTAATCAGTGTTACTGCACCCAATATGCACCCAAATAATTATAGCTGCTCTTTGGTGATCTATCCTGTGGAGTCACGAGGGTCCTAAACATACAGGACTAGAGTCTGTTATAGAACTCCTATATgatcctatatgatcagtggatcTGATAAGTTTTATAATGGGTGCAGTAACacagaggtggtcataatgtcaTGAATGTCTGGTGTGTATACATGTCCGTTGTACTGTTCAGATGCTGGCTGTAATCTGAAGTGGTGGAGATTAAAGCTGAAGTGGTTTGTttagtttga

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132723 lncRNA upstream 6291 8910008 ~ 8910285 (+) True G98462
TU132721 lncRNA upstream 8892 8907264 ~ 8907684 (+) True G98460
TU132718 lncRNA upstream 22296 8894054 ~ 8894280 (+) True G98457
XR_002650530.1 lncRNA upstream 23314 8862875 ~ 8893262 (+) True LOC111193443
XR_002650531.1 lncRNA upstream 23314 8862875 ~ 8893262 (+) False LOC111193443
TU132744 lncRNA downstream 36805 8963313 ~ 8965169 (+) True G98483
TU132759 lncRNA downstream 136661 9063169 ~ 9153581 (+) False G98494
TU132764 lncRNA downstream 157081 9083589 ~ 9086583 (+) False G98496
TU132765 lncRNA downstream 157081 9083589 ~ 9086317 (+) True G98496
TU132766 lncRNA downstream 157261 9083769 ~ 9084299 (+) True G98497
XM_007239442.3 mRNA upstream 95387 8818913 ~ 8821189 (+) True LOC103033147
XM_022674286.1 mRNA upstream 101436 8799265 ~ 8815140 (+) True nap1l1
XM_007239445.3 mRNA downstream 97879 9024387 ~ 9034301 (+) True ccdc107
XM_007239449.3 mRNA downstream 121357 9047865 ~ 9080238 (+) True LOC103035505
XM_022674292.1 mRNA downstream 253277 9179785 ~ 9195720 (+) True cpsf6
XM_022674047.1 mRNA downstream 288344 9214852 ~ 9268400 (+) True LOC103042523
XM_022674048.1 mRNA downstream 436560 9363068 ~ 9365903 (+) True LOC111193395
XR_002650533.1 other upstream 20979 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 1785767 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 1846447 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 1850564 7062190 ~ 7066012 (+) False apoc1
TU131601 other upstream 2351573 6532516 ~ 6565003 (+) False G97678
TU132981 other downstream 385898 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 1071204 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 1133925 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 1246045 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 1567283 10493791 ~ 10498518 (+) True G98967

Expression Profile