RNA id: XM_022674292.1


Basic Information

Item Value
RNA id XM_022674292.1
length 2090
RNA type mRNA
GC content 0.58
exon number 11
gene id cpsf6
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9179785 ~ 9195720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGAAGTGCGCGCCCCCGCTCGGCTCGCTCCCGCGCTGCAGTGAGAGATGGCGGACGGTGTGGATCATATAGATATCTACGCGGATGTGGAGGAAGAGTTTACACAGgaAGCAGATTACCCCGTTCATGAACAGATAGACCTGTATGATGACGTCATCTCGCCATCGGCCAATAACGGAGATGCTCCTGAGGACCGAGATTACCTGGACAACCTGCCGGCCCCAGGGGGCTCTGAGGGAAGCAAAGGGCCCCCATCTAACATAGTGTTCACATACACGGGCAAACGCATCGCTCTGTACATTGGAAACCTTACTTGGtggaCCACAGATGAAGATCTGACTGAGGCCATCCGCTCCATCGGTATTAACGACGTGCTGGAGATCAAGTTCTTTGAGAATCGAGCTAACGGCCAGTCTAAAGGattTGCGCTGGTGTGTGTGGGCTCTGACTCCTCCTCCAGGAAGCTTTTGGACCTGCTGTCGAAGCGCGAGCTGCATGGGCAGAACCCCATAGTTACCCCCTGCAACAAGCAGTCACTCAGCCAGTTCGAGATGCAGTCACGAAAGAGTACCCAGTCCGGACAGATGTCAGGAGAGGGTAAGGCAGGACCCCCAGGTGTGGGGCCCCGCGGTGCCTTCCCTTTGAGCAGGGGTCGAGGACGCTTTCCGGGGCCATCTGGGCCCGGAGGGGACCGCTTTCCTGGACCTGTCGGACCCGGGGCGCCCCCGCCACACTTCCCAGGGAGTATGCAAGGGCCACCTCGTCCTCCTCCCGGACCCCCAGGTCCCCCGGGCCCCCCAGGACCGCCTCCCCCAGGGCAGGGTCTCCCCCCACCCCTCTCCGGCCCCCCAAACAGAGGCGACCGCCCCCCTCCCCCTGTCATGTTCCCTGGTCAGTTTGGTCAGCCTCCTATGGGCCCCATGCCTCCTGGCCCTCCACCACCAGGCTATGGGCCACCCCCTGGCCCACCTCCACCACAGCAAGGCCCACCCCCTCCTGGCCCATTCCCTCCTCGTCCCCCTGGTCCTATTGGTCCACCTCTGGCTTTGGCCCCACCTCACTTGCGTGGCCCTCCTCCTGGAGGTCCGCCCCCAGCCCCCCATGTCAACCCTGCCTTCTTCCCTCCACCTGGAAACAACAACATGCCCTCGTCAGACAGAGGTCCTCCACCAAACGACCCGTACGGACGCCCGCCTCCATATGACCGAGATTACGGCCCTGGCAGggaTATGGATGCCCCTCGGGTTCCTCTGAGTGAGGCGGAGTTTGAGGAGATAATGAATCGGAACAGAGCGATTTCTAGCAGCGCCATATCTCGGGCTGTTTCAGATGCGAGTGCAGCGGATTACGGCAGCGCTATCGAGACTCTGGTGACGGCCATCTCGCTAATTAAACAGTCGAAAGTGTCAGCTGATGACCGCTGCAAAGTTCTAATCAGCTCCCTACAGGACTGCCTACACGGCATCGAGTCCAAATCCTACGGCTCTGCCTCCAGGCGAGAGCGTTCCCGGGAACGAGACCACAGTCGTTCTCGTGAGAAAAGCCGGCGCCACAAGTCCCGCAGCCGTGACCGCCATGAGGACTACTACCGCGAGCGCAGCCGAGAGCGTGACCGGCACCGCGAGAGGGACCGGGACCGCGAGCGAGACCgggacagagagagggaatacCGCCACCGCTAGGTGGGAGAGAGAGCTGAACggaagaggatgaggaggagaacCATCGCAAGCGACACACACTCATCCATCAGCACCCTTCATCCTCCATCTACAGGAGGACTGGATTGGCGGATGCCGGACGGCGCTGCGGTATAGGTGTATATAAAGGAAGAGAATGCGTACACTCTTAATCCcacagctttttttattttttgatctTTTATTTGAGGAGAAATGCCTGTGTGTCCTGACCCCATCTATCCTCTGCCCACATCCTGAACTGTAGAATGTAATCTGTCACACTTGTTGTTTTTATAGGAACTTTTGGTTTAAGCCCCTCCCCCTTTACCTTCCCCTATGCAGTGTGTAAGTGTTTGCTCTGATTTATTAAATAGAATCTGTGTTGTAATAAAGTGTTTACTGGGGTC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132810 lncRNA upstream 467 9178506 ~ 9179318 (+) True G98508
TU132759 lncRNA upstream 26204 9063169 ~ 9153581 (+) False G98494
TU132802 lncRNA upstream 39205 9139334 ~ 9140580 (+) True G98500
TU132757 lncRNA upstream 75651 9101484 ~ 9104134 (+) True G98494
TU132780 lncRNA upstream 82902 9086633 ~ 9096883 (+) False G98498
TU132975 lncRNA downstream 91920 9287640 ~ 9292655 (+) True G98630
TU132980 lncRNA downstream 113538 9309258 ~ 9309691 (+) True G98635
XR_002650503.1 lncRNA downstream 133187 9328907 ~ 9338005 (+) True LOC111193403
TU132982 lncRNA downstream 133455 9329175 ~ 9337988 (+) False LOC111193403
TU133009 lncRNA downstream 179136 9374856 ~ 9375545 (+) True G98657
XM_007239449.3 mRNA upstream 99547 9047865 ~ 9080238 (+) True LOC103035505
XM_007239445.3 mRNA upstream 145484 9024387 ~ 9034301 (+) True ccdc107
XM_022674288.1 mRNA upstream 253277 8916576 ~ 8926508 (+) True krr1
XM_007239442.3 mRNA upstream 358596 8818913 ~ 8821189 (+) True LOC103033147
XM_007239437.3 mRNA upstream 364645 8799273 ~ 8815140 (+) False nap1l1
XM_022674047.1 mRNA downstream 19132 9214852 ~ 9268400 (+) True LOC103042523
XM_022674048.1 mRNA downstream 167348 9363068 ~ 9365903 (+) True LOC111193395
XM_022674294.1 mRNA downstream 209100 9404820 ~ 9458769 (+) True LOC103028562
XM_022674295.1 mRNA downstream 277677 9473397 ~ 9508318 (+) True LOC103028240
XM_022674296.1 mRNA downstream 282261 9477981 ~ 9508318 (+) False LOC103028240
XR_002650533.1 other upstream 284188 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 2048976 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 2109656 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 2113773 7062190 ~ 7066012 (+) False apoc1
TU131600 other upstream 2614782 6558857 ~ 6565003 (+) True G97678
TU132981 other downstream 116686 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 801992 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 864713 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 976833 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 1298071 10493791 ~ 10498518 (+) True G98967

Expression Profile