RNA id: XM_022674329.1


Basic Information

Item Value
RNA id XM_022674329.1
length 2365
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC103032145
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11079535 ~ 11101099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAAATGGAACAAGGCGCCGGGatgctgaggctgaggctggatGTGGTCGGAACGGAATATTAGGATATTTATTTAAACGTTTAAACGACATACAGCGAGCAAATACAGACGGAAAAGCAACGCTAAGACAATGGCTGACCGAACCGACCTGAAAGCTGAACTTGAGCGCAAAAAACAGCGACTCGCCCAGatcagagaggaaaagaaaaggaaggaggaggagagaaaaaagaaagagTCTGAGGTACAGCAAAGGGCAGAGAAAGCAACAGAAGAGTCAGATCTGGAccgaaagagaaaagagacagaagatTTCCTGCAGAGCGTTGGCATCTCACCTGAACCACCTTTAGTGAGCACACCCAGTGAGGTGGGGAGCCAGGAGTCGGTGGACGGTGGGACAGTAACCAGATATAGGACGCTGCAGTGGGACACAGACCCCTCAGCTCTTCAGCTTCTCGCAGACTCTGAGCATGGGTGCAGAATGCGGAGACTTGGAGCATCCAAGATTGTTCAGATTGACTTCATGCCCAAAGAATTGGTGACATATTCTAAAGAGACCCAGACTCCTATTGCTCCAAATCTGTCTGAAGaagaggaggaggatgaggagctGCCAGTGGTCAAAACCAAACCTCAGTCAGATgaacaggaggaggaagatCCTCAGGAGACTAACAAAGATCTTCCACGGGAGCTGACAGAAGAAGAGAAGCAGCAGATTGTTCACTCAGAGGATTTCCTCATGTTCTTTGACCGCAGCATCCGGGTGATGGAGCGCGCTCTAGCGGAAGATTCTGATATATTCTTCGACTACAGCGGCCGTGACATGGAAGAAAGAGAGGGGGAGACACAAGCTGGACTAAATATGTCTTTCAACCGACAATTCTATGATGAGCAGTGGTCAAAGCATCGAGTTGTCACCTGTCTGGACTGGTCACCACAGtTCTCTGAGTTGCTTGTAGCCTCTTATAACGCTAATGAAGATGCTCCACACGAACCGGATGGAGTCGTCCTGGTGTGGAACATGAAGTTTAAGAAGACAACTCCAGAATATATATTCCACTGTCAGTCTTCTGTGATGTCAGTGGGCTTTGCACAGTTTCATCCTAACCTGGTTGTTGGAGGAACATACTCAGGGCAGATTGTGCTGTGGGACAATCGAAGCCACAGGAGGACGCCAGTACAAAGGACCCCTCTATCTGCTGCTGCTCACACTCACCCGGTATACTGTGTAAATGTGGTGGGAACCCAGAATGCCAACAACCTGATCACCGTGTCCACAGACGGAAAGATGTGTTCCTGGAGCTTAGACATGCTTTCTCAGCCACAGGAGAGCATGGAGCTGATCTACAACAAGTCTAAGGTTGTCGCTGTAACCGGGATGGCCTTTCCTGCTGGTGATGTGAATAACTTTGTAGTGGGCAGTGAGGAAGGGACAGTTTACACAGCCTCTCGACACGGCAGTAAAGCTGGCATTGGTGAGATGTTTGAGGGGCACCAGGGGCCTGTGACTGGCATCAGCTGCCATAACGCAATGGGACCCATTGATTTCTCTCACCTCTTCACTACCTCATCTTTTGACTGGACGGTCAAACTATGGTCAACTAAACATAACAAACCCCTGTACTCCTTTGAGGACAACGCTGACTACGTCTATGATGTTATGTGGTCTCCTGTGCACCCGGCTCTGTTTGCTACAGTGGATGGAATGGGCCATTTAGACCTGTGGAACCTCAATAATGACACAGAGGTTCCCACTGCAAGTGTGACAGTGGAGGGTTCATGTGCCCTGAACCGGGTAAGGTGGGCATCAGGAGGTCGGGAGGTAGCAGCAGGTGATTCAGAGGGACACGTGTGGATCTATGACGTTGGAGAGCAACTGGCTGTACCTCATTCAGAGGACTGGAGCCGACTGGCACGTGTTCTGATGGAAATCCGAGCAAACACCGACGGAGAACAAGAGGGGGCCATAGAAGTGACTGGCTGAAAGCACAGCAGTGTCATAAACACAGCGCACACAGTATGTGTGGTATGTGGATTAATGTTCCGTAAGGGTGACCAGGGCATGAACTAACACGTCTTGGTTGTGTTTGATCAGGATTAATAGCATTTGCACAATTAATTGGAAATAGAGATGGGCTTGTTGTAACAGTATCTAAAAAAGTCTGCTAAATCAatgcaaaatgtttaaaaaaaaaatattttttttccacgaAATAGAACACAAATAATGCCACGACTGCATCACATTATTATTCTGTATGTACtgaatttttatgtttttttttttttttttgggaggtttacatttaacactgtattaaaacaaaccCTACCTTGTGGAGGCTGTATTACGTATA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650540.1 lncRNA upstream 87132 10988307 ~ 10992403 (+) True LOC111193451
XR_002650541.1 lncRNA upstream 106423 10971936 ~ 10973112 (+) True LOC111193452
TU133573 lncRNA upstream 155141 10922030 ~ 10924394 (+) True G99079
TU133579 lncRNA upstream 218297 10859246 ~ 10861238 (+) False G99083
TU133630 lncRNA downstream 33591 11134690 ~ 11141069 (+) True G99114
TU133636 lncRNA downstream 43958 11145057 ~ 11155000 (+) True G99115
TU133643 lncRNA downstream 65330 11166429 ~ 11175989 (+) True G99119
TU133812 lncRNA downstream 260142 11361241 ~ 11364273 (+) True G99244
TU133814 lncRNA downstream 260142 11361241 ~ 11364273 (+) False G99244
XM_022674324.1 mRNA upstream 31845 11028822 ~ 11047690 (+) True abhd16a
XM_022674323.1 mRNA upstream 52111 10999925 ~ 11027424 (+) True LOC103033199
XM_007250856.3 mRNA upstream 301412 10771498 ~ 10778123 (+) True rabac1
XM_007250865.3 mRNA upstream 590966 10469175 ~ 10488569 (+) False gsk3a
XM_022674332.1 mRNA downstream 10956 11112055 ~ 11127909 (+) True zfat
XM_022674337.1 mRNA downstream 86050 11187149 ~ 11281470 (+) True LOC103022365
XM_022674340.1 mRNA downstream 192999 11294098 ~ 11299863 (+) False LOC111188200
XM_022674343.1 mRNA downstream 308359 11409458 ~ 11420340 (+) True dap3
XM_015607652.2 mRNA downstream 320435 11421534 ~ 11443382 (+) True gba
XR_002650542.1 other upstream 31845 11028822 ~ 11047690 (+) False abhd16a
TU133597 other upstream 52118 11021682 ~ 11027417 (+) False LOC103033199
TU133435 other upstream 581017 10493791 ~ 10498518 (+) True G98967
TU133394 other upstream 901076 10172553 ~ 10178459 (+) True G98934
TU133280 other upstream 1010533 10060433 ~ 10069002 (+) True G98845
TU133585 other downstream 192993 11294092 ~ 11302885 (+) True LOC111188200
TU133586 other downstream 192993 11294092 ~ 11302885 (+) False LOC111188200

Expression Profile