RNA id: XR_002650530.1


Basic Information

Item Value
RNA id XR_002650530.1
length 861
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id LOC111193443
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8862875 ~ 8893262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCTCCCCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTCCGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGCAGGATTTGGTATCCACAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAATGGCACAATTTCATGTCTTCCAGATGCTTGCATGCTGGTAGTCGGCAAGCGGCTCCCTGGGGCGCATTGCCAAAGCAGGAACCCCGGCACCATCGCCCTCCACGTGGGGATGAGCTTTCGGGAGCGACCGGCCCCGTTCCACAGAGACAGGCTTCTCTCTGTGAACATCGAGGCGGTGCTACGCTGAGACTGACTGTCTCTACCCAGTCACACCAGCCAAgCTGCACTGTAGTGGTGTTAAGTGTCCAAGAATGCTCTCATCAGTGGAGGCACAGCTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132683 lncRNA upstream 111390 8750636 ~ 8751485 (+) True G98436
TU132675 lncRNA upstream 120427 8741460 ~ 8742448 (+) True G98432
TU132672 lncRNA upstream 125924 8736223 ~ 8736951 (+) True G98430
TU132671 lncRNA upstream 128635 8733971 ~ 8734240 (+) True G98429
TU132478 lncRNA upstream 255820 8602977 ~ 8607055 (+) True G98285
TU132718 lncRNA downstream 792 8894054 ~ 8894280 (+) True G98457
TU132721 lncRNA downstream 14002 8907264 ~ 8907684 (+) True G98460
TU132723 lncRNA downstream 16746 8910008 ~ 8910285 (+) True G98462
TU132744 lncRNA downstream 70051 8963313 ~ 8965169 (+) True G98483
TU132759 lncRNA downstream 169907 9063169 ~ 9153581 (+) False G98494
XM_007239442.3 mRNA upstream 41686 8818913 ~ 8821189 (+) True LOC103033147
XM_022674286.1 mRNA upstream 47735 8799265 ~ 8815140 (+) True nap1l1
XM_007239438.3 mRNA upstream 47735 8799265 ~ 8815140 (+) False nap1l1
XM_007239440.3 mRNA upstream 47735 8799266 ~ 8815140 (+) False nap1l1
XM_007239437.3 mRNA upstream 47735 8799273 ~ 8815140 (+) False nap1l1
XM_022674288.1 mRNA downstream 23314 8916576 ~ 8926508 (+) True krr1
XM_007239445.3 mRNA downstream 131125 9024387 ~ 9034301 (+) True ccdc107
XM_007239449.3 mRNA downstream 154603 9047865 ~ 9080238 (+) True LOC103035505
XM_022674292.1 mRNA downstream 286523 9179785 ~ 9195720 (+) True cpsf6
XM_022674047.1 mRNA downstream 321590 9214852 ~ 9268400 (+) True LOC103042523
TU132007 other upstream 1732066 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 1792746 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 1796863 7062190 ~ 7066012 (+) False apoc1
TU131601 other upstream 2297872 6532516 ~ 6565003 (+) False G97678
TU132981 other downstream 419144 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 1104450 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 1167171 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 1279291 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 1600529 10493791 ~ 10498518 (+) True G98967

Expression Profile