RNA id: XR_002650535.1


Basic Information

Item Value
RNA id XR_002650535.1
length 366
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id LOC111193448
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9725074 ~ 9736479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGAGGTCATACAGCTTACAGGTGGCGTCGTCAGAGCCTGTGATCACCGCATTACCGTTGGGGAAAAACTACGGAGGGAAGAGGAAGGACGAAATCCCCTCTTGCTATCCATCTTTCAGCCAGTTCTCCCAGTTCAAGGTTGTAGATGGAGCACATGTTGTCCAGTCCTCCGCATGCCACCATGTTTCCTGAGGGGGCGTAGGAGCAGGTCATCACCCAGGAAGACTTCAGAGGGATGGCATTTACCTGGGACACGGGCATGGGGAAGAATTCACAGGGCTTTCTGCCTCCTTTCGAAGCTGCTCCATTTCCCCCATGGCGCTGGTAATCAGGCACGGTCACCGGAAGTCCGATCTGGTGAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133056 lncRNA upstream 198633 9526155 ~ 9526441 (+) True G98689
TU133026 lncRNA upstream 258072 9438030 ~ 9467002 (+) True G98672
TU133025 lncRNA upstream 264177 9413971 ~ 9460897 (+) True G98671
TU133016 lncRNA upstream 342336 9380969 ~ 9382738 (+) True G98663
TU133009 lncRNA upstream 349529 9374856 ~ 9375545 (+) True G98657
TU133169 lncRNA downstream 14699 9751178 ~ 9751710 (+) True G98772
TU133200 lncRNA downstream 17742 9754221 ~ 9764625 (+) True G98795
TU133203 lncRNA downstream 33954 9770433 ~ 9771198 (+) True G98798
TU133253 lncRNA downstream 210915 9947394 ~ 10003864 (+) True G98831
TU133249 lncRNA downstream 232112 9968591 ~ 9974778 (+) True G98829
XM_007250886.3 mRNA upstream 5084 9713770 ~ 9719990 (+) True cdca3
XM_022674304.1 mRNA upstream 12612 9690963 ~ 9712462 (+) True pex5
XM_022674311.1 mRNA downstream 40610 9777089 ~ 9800737 (+) True usp5
XM_022674312.1 mRNA downstream 40610 9777089 ~ 9800737 (+) False usp5
XM_022674310.1 mRNA downstream 40610 9777089 ~ 9794288 (+) False usp5
XM_022674313.1 mRNA downstream 70299 9806778 ~ 9831377 (+) True lag3
XM_022674315.1 mRNA downstream 96497 9832976 ~ 9860309 (+) False LOC103042078
TU132981 other upstream 412271 9312406 ~ 9312803 (+) True G98636
XR_002650533.1 other upstream 829477 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 2594265 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 2654945 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 2659062 7062190 ~ 7066012 (+) False apoc1
TU133263 other downstream 261233 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 323954 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 436074 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 757312 10493791 ~ 10498518 (+) True G98967
TU133597 other downstream 1285203 11021682 ~ 11027417 (+) False LOC103033199

Expression Profile