RNA id: TU179842


Basic Information

Item Value
RNA id TU179842
length 484
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G132996
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18776122 ~ 18776723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attagaaacatttttaacattattatttaactgccaatactgacagtatattgCTGGGGCAGAATaagagtaaactcagtaaagagtgaactctgtagctcaaagccagcatactgtgatcactacaaacacaacaaagttaatgtgctcttacagcctacaacactgaggcctggcaaccaacacatatattatattactgcacgcccaggatcaggtagctttgtacaacagacaacacaaagatggtaagtaagggagagaccacacccaatatgcaaatattggcctggcaatcaacgtatatattataattagtgCACGCCCagaataaggtagctttgggcaacagacaacacaaagatggtaagtaagggagcggctacacccaatatgcagatatatggtaccaggaaccaataggaaagctgcatgaaccaacactgtagaaagagctaaaagttggttgaaatcacattttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179840 lncRNA upstream 2517 18772391 ~ 18773605 (+) True G132994
TU179827 lncRNA upstream 60121 18711740 ~ 18716001 (+) True G132983
TU179825 lncRNA upstream 73938 18655259 ~ 18702184 (+) True G132981
TU179788 lncRNA upstream 133372 18642219 ~ 18642750 (+) True G132948
TU179785 lncRNA upstream 151820 18623572 ~ 18624302 (+) True G132946
TU179893 lncRNA downstream 99956 18876679 ~ 18877007 (+) True G133042
TU179894 lncRNA downstream 99956 18876679 ~ 18952450 (+) False G133042
TU179916 lncRNA downstream 114096 18890819 ~ 18908346 (+) True G133046
TU179918 lncRNA downstream 115199 18891922 ~ 18907238 (+) True G133047
TU179935 lncRNA downstream 149259 18925982 ~ 18931169 (+) True G133055
XM_022677294.1 mRNA upstream 7702 18739058 ~ 18768420 (+) True LOC103024383
XM_022677293.1 mRNA upstream 7702 18739058 ~ 18768420 (+) False LOC103024383
XM_022677292.1 mRNA upstream 7702 18739059 ~ 18768420 (+) False LOC103024383
XM_007243358.2 mRNA upstream 410657 18362715 ~ 18365465 (+) True cyr61
XM_022676751.1 mRNA upstream 561449 18213885 ~ 18214673 (+) True LOC111194038
XM_022677298.1 mRNA downstream 56626 18833349 ~ 18853525 (+) True LOC103025011
XM_022677300.1 mRNA downstream 138662 18915385 ~ 18923002 (+) True LOC103025641
XM_022677302.1 mRNA downstream 177966 18954689 ~ 18962846 (+) True LOC103025945
XM_022677306.1 mRNA downstream 258720 19035443 ~ 19195367 (+) True LOC103045888
XM_007234649.3 mRNA downstream 570822 19347545 ~ 19360891 (+) True LOC103042214
XR_454515.3 other upstream 3038341 15730946 ~ 15737781 (+) True LOC103031494
TU178958 other upstream 3038420 15730897 ~ 15737702 (+) False LOC103031494
TU178833 other upstream 3310037 15459987 ~ 15466085 (+) False ddost
TU178746 other upstream 3378686 15375657 ~ 15397436 (+) False fam131c
TU178747 other upstream 3400541 15364479 ~ 15375581 (+) False fam131c
TU179969 other downstream 266771 19043494 ~ 19044186 (+) True G133076
TU180218 other downstream 1346667 20123390 ~ 20124548 (+) True G133246
TU180542 other downstream 2232020 21008743 ~ 21015058 (+) True G133501
TU180543 other downstream 2233184 21009907 ~ 21015916 (+) True G133502
TU180545 other downstream 2235007 21011730 ~ 21017977 (+) True G133503

Expression Profile