RNA id: TU179894


Basic Information

Item Value
RNA id TU179894
length 209
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G133042
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18876679 ~ 18952450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaaaattaaactccttaattacggcaacttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagacttatttgccccgtttttctgcgctagaaatgcacactctctccgcttttagactctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179842 lncRNA upstream 99956 18776122 ~ 18776723 (+) True G132996
TU179840 lncRNA upstream 103074 18772391 ~ 18773605 (+) True G132994
TU179827 lncRNA upstream 160678 18711740 ~ 18716001 (+) True G132983
TU179825 lncRNA upstream 174495 18655259 ~ 18702184 (+) True G132981
TU179788 lncRNA upstream 233929 18642219 ~ 18642750 (+) True G132948
TU179902 lncRNA downstream 23954 18976404 ~ 18987771 (+) True G133043
TU179972 lncRNA downstream 91799 19044249 ~ 19045514 (+) True G133077
TU179975 lncRNA downstream 93540 19045990 ~ 19047682 (+) True G133079
TU180105 lncRNA downstream 368608 19321058 ~ 19321314 (+) True G133154
TU180106 lncRNA downstream 395018 19347468 ~ 19360327 (+) False LOC103042214
XM_022677298.1 mRNA upstream 23154 18833349 ~ 18853525 (+) True LOC103025011
XM_022677294.1 mRNA upstream 108259 18739058 ~ 18768420 (+) True LOC103024383
XM_022677293.1 mRNA upstream 108259 18739058 ~ 18768420 (+) False LOC103024383
XM_022677292.1 mRNA upstream 108259 18739059 ~ 18768420 (+) False LOC103024383
XM_007243358.2 mRNA upstream 511214 18362715 ~ 18365465 (+) True cyr61
XM_022677302.1 mRNA downstream 2239 18954689 ~ 18962846 (+) True LOC103025945
XM_022677306.1 mRNA downstream 82993 19035443 ~ 19195367 (+) True LOC103045888
XM_007234649.3 mRNA downstream 395095 19347545 ~ 19360891 (+) True LOC103042214
XM_022677311.1 mRNA downstream 429862 19382312 ~ 19393378 (+) True ttll9
XM_007234650.3 mRNA downstream 445725 19398175 ~ 19400544 (+) True LOC103042623
XR_454515.3 other upstream 3138898 15730946 ~ 15737781 (+) True LOC103031494
TU178958 other upstream 3138977 15730897 ~ 15737702 (+) False LOC103031494
TU178833 other upstream 3410594 15459987 ~ 15466085 (+) False ddost
TU178746 other upstream 3479243 15375657 ~ 15397436 (+) False fam131c
TU178747 other upstream 3501098 15364479 ~ 15375581 (+) False fam131c
TU179969 other downstream 91044 19043494 ~ 19044186 (+) True G133076
TU180218 other downstream 1170940 20123390 ~ 20124548 (+) True G133246
TU180542 other downstream 2056293 21008743 ~ 21015058 (+) True G133501
TU180543 other downstream 2057457 21009907 ~ 21015916 (+) True G133502
TU180545 other downstream 2059280 21011730 ~ 21017977 (+) True G133503

Expression Profile