RNA id: TU181879


Basic Information

Item Value
RNA id TU181879
length 738
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G134462
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24804059 ~ 24804796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgagatatacctttaatactatataaaattgTGTGGTATAcctttaatactatataaaatattgtggcatctgttatactatataaaatatagtggtacacttgttatactatgtaaaataaatgctggTATACCTGTTATaccatataaaatattgtgatataactttaatactgtataaaatattgtggtatacctttaatagtaaataaaatattctggtATCTACAATATTGTGGTATACATTttatactatgtaaaatattgtggtataccgGTTATAATATATAGAACACTGTGGTATACATGTTATACTATGTAACAATTTGTGATAAGCCTTTTATagtacataaaatgtattttttttcacataatttAGAGATTAACAGTAAATTAAGATTAGTGTATAGAAAAACGTGTTTAAATGCCTCTAAATTTCAGTAGATTCTagttacatttaaaatctaAGCTGCTGTTCTTTGATAGCACACTGGGATTTGAACTCGCGACCTTTGTATCTGCCCCGATCTTCCCTTTAGCTcagaaaatgacaataataatataaaaagaaacatattcaacgaaataaacactgcagttctttaaaagaGGCAGAaccatttcatttttcagtttttgctcGATggttaacttttctttttctcgctttctttccttttccctTCTTCCCCCTTCTTCCctccattttttcttcttcccacGGTAAAGCAGACTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181846 lncRNA upstream 47580 24751925 ~ 24756479 (+) True G134434
TU181857 lncRNA upstream 84671 24715513 ~ 24719388 (+) True G134444
TU181841 lncRNA upstream 148211 24654175 ~ 24655848 (+) True G134430
TU181833 lncRNA upstream 171929 24621908 ~ 24632130 (+) False G134426
TU181896 lncRNA downstream 34509 24839305 ~ 24839935 (+) True G134475
TU181897 lncRNA downstream 35333 24840129 ~ 24840348 (+) True G134476
TU181898 lncRNA downstream 36147 24840943 ~ 24841238 (+) True G134477
TU182092 lncRNA downstream 381020 25185816 ~ 25189898 (+) False smim4
TU182090 lncRNA downstream 381144 25185940 ~ 25190306 (+) True smim4
XM_022677394.1 mRNA upstream 2432 24798525 ~ 24801627 (+) True fkbpl
XM_022677386.1 mRNA upstream 142525 24605687 ~ 24661534 (+) True LOC103036968
XM_007249908.3 mRNA downstream 7101 24811897 ~ 24814853 (+) True ccdc115
XM_007249909.3 mRNA downstream 10573 24815369 ~ 24820684 (+) False LOC103033727
XM_022677395.1 mRNA downstream 10905 24815701 ~ 24820684 (+) True LOC103033727
XM_007249910.3 mRNA downstream 11870 24816666 ~ 24820684 (+) False LOC103033727
XM_007249912.3 mRNA downstream 18714 24823510 ~ 24829732 (+) True apobec2
TU181830 other upstream 173977 24621908 ~ 24630082 (+) True G134426
TU181746 other upstream 301082 24489905 ~ 24502977 (+) True LOC103040021
TU181747 other upstream 301082 24491003 ~ 24502977 (+) False LOC103040021
XR_002650925.1 other upstream 326409 24457876 ~ 24477650 (+) False LOC103040548
TU181574 other upstream 475732 24323495 ~ 24328327 (+) True G134236
trnan-guu_2 other downstream 6 24804802 ~ 24804873 (+) True trnan-guu_2
trnae-uuc_18 other downstream 6133 24810929 ~ 24811000 (+) True trnae-uuc_18
TU182111 other downstream 496230 25301026 ~ 25306348 (+) False emd
TU182113 other downstream 496230 25301026 ~ 25306348 (+) False emd
TU182114 other downstream 496230 25301026 ~ 25306348 (+) False emd

Expression Profile