RNA id: XM_015606211.2



Basic Information


Item Value
RNA id XM_015606211.2
length 4696
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC103029094
representative True

Chromosome Information


Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 20253247 ~ 20281369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCGCCTCGTAAGCACCGGCCTGGCTGAGCCGGAGAAAACAAACTGCGTggagagaagcagcagcatgaGACCTGAAGGACTCAGCGAGCTCCTACAACTGTTCTCCTGAGACCGGGAGTGAAATTTACTGCAGAACAGATTGGTGTCAAGCATCCAGCATGACCAAGACCCCCCCTCACCGACAAGGGATCACGTTTGAGGTGGGGGCACCATTGGAGGCCCGTGACAGCCTGAAAAACTGGTATGTGGCCAACATAGAGAAGATTGACCATGAGGAGGAGAAGATCCTGATTCACTACCGGCAGTGGAGCCATCGCTACGATGAGTGGTTTGACTGGAACAGTCCGTATCTGCGGCCTGTGGAACGTGTCCAGCTCCGGCGGCAGGGCCTGCAGGAGCACACGAACCCGgGATTTCATATTAACCAAAAAGTTCTTGCCAGCTGGTCAGACTGCCGCTATTACCCTGCTAAGATCCTCTCCCTCGATAAAGATGATTTCTACACAGTGAAGTTTTTCGATGGGGTTGTCAAGACTGTGAAGGGAATAAAGATTAAGCCCTTTAATAAGGAGaatggcaAGTCTGCACCTCAAAGCCAAAAGCGTGGCGGCCCgccagtaaaacactgtaaggCCAAAGAGAACGGCACAGGCAGGAGCAACGGCAGGAGGCATAGCACCTCCGACCATGATGTGCTCAGTGACTCAGAAGGGAAAAACAACAAGTTAACTGTGGAACCCAGCAAGCTGCAGAACGGCACAGCGGACAAGAGCGAAGTAACAGAGAGGGTAAACGGGACTGCGGAGACAGAGGAGACGTCGCccagaggagaagagaagaccAAAGTACCAGAGAACAGAGAagaggaggggagagaggtgaaTGGAGGAGCAGAGGAGGAGAAAGCAGACACGCTTCAGAATGGCACTCATGAGAGCAATGAGGAGAAACAGGAGAAAGATGAAGCATCAGATCCTGGTCCCGGCCTGGCCACGAGGACAAGGAGCAAGGTGGCAGCTGAAGGCAAAGATGCAGAAAAGCCAAACGTGCCAGAACTGAGGAAGCGACGTGCATCCTCAGGACAAGCGCCTCCGTCCAAGAGGAGCAGAGCCAACTCAAGTACAGACAGAACCAGTCGATCACACATCCTGCCTGCTAAACCAGATTCCATCCAAAAAAGCTCAGAAGATAAAGAGAGCCACGCTCAGCCAGTCCATCCAGAGACCCCTAACCTTACAGGAGAGTCAGGGCCCACGGCTGATCAtgcgGGATTAATGCAGCGGCAAACTCACCTTCCAACCTCCAATAAATACAGCAGGGAACCATTGTACAGAGTCATCAAAAACCAGCCGCCACCCATCCTCTCCATTGAGCTGGACCACAACCCCTTTAAGTGCCAGGTCCCCGGCTGCACAAAGTCCTTCCGCAAAGCCTCTCTCCTACACTACCACATGAAGTACTACCACTCACAGAGCGACCTGAGCCCCACCTGCAGCGTCCAGGCGCGAGCCTCCGACCGGCAGCCCCACTGCCAGGAGACCCCCCGCAGGCGCCGCACTGTTTCTGCGTCACTAGACACTCCATCTCCTCTGAGTGACAGCAAGTCTGGCCACACTCAGTCACCCCCTACTGCCAATGGCGTGCATCGCCAGCGCAGTTCCTCCCACTGCGAGCGAAGCAAAGAAAACCAGCACGCCAACCGCTCCCTCCATGACGACAGAGACTGGGTCGCCATGGAAACAGAACGAGAGAAACGACGAGAGAGGAGACAAAGAGATTTATTCTGCATCAAgtcaaagaaaaagaagaagaagaaaaagaagtccAAGTCAGACTCTCACAGCAGTGAGAAGAGCACTGGCTTTAGCTCCTCCCCCTTCAATCTGAAACTGTCGCTCAAATTGCCCCTCTCCCACAAACACTGCTCCCACGCTGCACACTGCCCCGAACAGGAGCTGGATGATGGTGAAGACAGTGGCAGTGATTGGTCCACAGAAAGCCCCCCGTGGAGTGAGGAGGAGTCTGAGTTGGGGCTGGGCCAGAACACACCCCTCTCTGAGCAGGGCGTGGAAACCGTGACTCATGCATCGGAGATTgttcggtgtgtgtgtgaggtgcagGAGGAGAACGACTTCATGATCCAGTGTGATGAGTGTCTGTGCTGGCAACACGGCACATGCATGGGTCTGTATGAGGACAGCGTACCTGACTCCTACAACTGCTACATCTGCAGGGACCCTCCAGctcagagGCAGAGTCAGCGTTACTGGTATGATAAGGATTGGCTGAGCAGTGGTCACATGTGTGGACTGTCCTTCCTGCAAGAGAACTACTCGCACCAGAACAGTAAGAAAATGGCCACCACACACCAGCTCTTGGGTGACGTCCACCGCGTGTTCGAGGTGCTCAACGGCCTTCAGCTCAAGATGAGCATCCTACAGACACAATCCCACCCAGATCTGAAGTTGTGGCGGCAGCCCTGGAGGTCGAACGAGGGTGTGCGCAAGAAATGGACGAGTGACTCCGGAATTACCACACCTTCTCCCCCCTCTCCTCAAGCATCAGACCCAAAGGATGGCGAGCCTGAGTCACCGTCGCCAGTGGGGACCCCCTATTCGTTTCACACCTCCTACATCAGCAGTGAGCACTGCTATCAGAAACCGCGTACATACTACCCGGTGCTGGAGCGGCGGCTGGTAGTAGAGACTCGAGGAGGTTCGGAGCTGGAGCACAGCCTGCGCAGCAGCGAGGATCTGCTGGAGCTCGCTGAGCATCGATACAGTGCCCCGCTGGAGTACGACCAGTGCAAACTGCAGCTGGCTGACTGCACCATCGGCAGCGCTAAGGAGCGAGAGTGTCGTATGAAGCTGCTGGCAGCCGCCGAGCGAGAGAAGAACTGTGTTGTCGAGGTAAAAGAGGAGGAGCCTGACCCCGTGACCTGTGACGTCAAGCCTGATCCTGATCTGCTGCTACACCAGCAGTGGCAGCTGAACCTGCTAGAACACATCGAGGCCGTACAGGAGGAAGTCAGCCACAGAATGGACCTTATAGAAAGGGAACTGGATGTTTTGGAAAGCTGGCTGGACTACACAGGCGAGCTGGAGCCTCCGGACCCTCTGGCTCGGCTACCTCAGCTGAAACACCGCATCAGACAGCTACTGACTGATCTGGGAACTGTTCAGCAGATCGCACTCTGCTCCTCTTCCACATGAGGGCGCCAGAGCACACGGCTGATATTCAGTGTGAAGAGACTTGAACCCTGAACTGAACAGACACTGTACTGGTATTGGTGGTGAGGCGCGGTTGGCCAACATGTTATGCTTCTATTTTGATGGCACGTCCCATTCACCAGTCCTCTGGAGGAAACTCCAGGCCAAACGAATCAAGCCATTACAGAAAAGCAGAGAGCGAGCCAGCGAGACGGAAGGGGAGAGTAACTTGAAAAAAGCTTGGCGGTAGGTTAGAGACTTGAATGTATATGATGAGGGTTGTGGTCCATTTTTGGGGCATAAATTACTCATAGTTTagaatttcttgttttttttttttttgggttgagAATGCATCTTAAAATGAGGGTAATGGCATTAAATGCAATGTAAGAAAcatttgaaactttttttttccaaattatgGAAGCTTTTGTTTTTGGCACTTAGGATTATAGTTGTTGGTTATCAGCATTATAAATATTCAATTGTTATAATTGTGTTTGATTGCAGACATTATTATGCAAAAGGTATCCTCCTGTGGCTCTgtagggagagaaagagagagatttgtgGCAATGGCAATGGGAAGAGTTTTGTAGCTGTtttaaaaaggaacaaaaaaaagagaaaagaagtaCACATGAAATgttaatatgaaaatatattttaatctgaAAAGTAATTGCATCTTTCTTCTATATTTGTACTGAATAGACAATGTAAATTGCCTACTGTGTAATAATACTGTTTAATCCATGTTCCAGACAGTTTCTGCTTGTTCATTTTTGCTATAACATTTGATCTAAACGGCAATGTTATTAACTGTGAGTCTGCATtcatattaatagtaataatattaataataggaCATTTATCCTTAATCTCTTGTGAATACTGTAGTACTGTTGTTTCTTTCATGTCTGCCTCTGTTTGGTTTCGACATGATGGCTATTGCTTGTGTTTCCTGTGAATGCAAATGTTTTTACTGGTGTATTTACCAAGCACAAATGGTTTTCAGATTTTCATATGGAAAAATGTATGTCATTTGTTTCCCCATTTTTCTCTCCGTTTTAGGATCCTGAAACATTCTGTACTGTCATTTCCAAATGGGTATATTTTCCATGTTTTACGTTTTCGAGGCTTTagctctcttttttatttattgtaattgagAATTTAAGTTATTGGTTTTGCTatatctttgtttttctttcattcattcattcactcgaTCAGTTATGTATTCTTTAtacaaacctgttttttttttttttcctcccctctccccccaacccccccttATTCTGCCTGACCCCAAAGCTaccctgccctgcacattttactgGTAATCAGATTTGTTTGGAACAAGGGGAGGTAAAAGAAAAGACTGCTGCTTTATAACAAAAGTACTTTTCACCTGTTAAATCGTCCCAGAACACATCAGAAGGGAAAGGATTTGGACAGTCTGTATAATAACCAGTAAA

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18402 PHF20; PHD finger protein 20

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180201 lncRNA upstream 294339 19953156 ~ 19958908 (+) True G133234
TU180207 lncRNA upstream 298914 19948944 ~ 19954333 (+) True G133236
TU180184 lncRNA upstream 349211 19903733 ~ 19904036 (+) True G133223
TU180181 lncRNA upstream 356542 19896497 ~ 19896705 (+) True G133220
TU180106 lncRNA upstream 892920 19347468 ~ 19360327 (+) False LOC103042214
TU180229 lncRNA downstream 5577 20286946 ~ 20287212 (+) True G133255
TU180232 lncRNA downstream 68469 20349838 ~ 20495831 (+) False LOC103029397
TU180238 lncRNA downstream 98063 20379432 ~ 20381174 (+) True G133259
TU180236 lncRNA downstream 127283 20408652 ~ 20440745 (+) True G133257
TU180250 lncRNA downstream 170794 20452163 ~ 20552471 (+) True G133269
XM_007250754.3 mRNA upstream 7556 20135533 ~ 20245691 (+) True LOC103028561
XM_007250755.3 mRNA upstream 7556 20204439 ~ 20245691 (+) False LOC103028561
XM_022677320.1 mRNA upstream 120371 19908724 ~ 20132876 (+) True LOC103040552
XM_007250757.3 mRNA downstream 11794 20293163 ~ 20399714 (+) True LOC103029397
XM_007250758.3 mRNA downstream 11796 20293165 ~ 20399714 (+) False LOC103029397
XM_007250759.3 mRNA downstream 84085 20365454 ~ 20399714 (+) False LOC103029397
XM_022677325.1 mRNA downstream 127836 20409205 ~ 20427079 (+) True sla2
XM_022677326.1 mRNA downstream 127836 20409205 ~ 20427079 (+) False sla2
TU180218 other upstream 128699 20123390 ~ 20124548 (+) True G133246
TU179969 other upstream 1209061 19043494 ~ 19044186 (+) True G133076
XR_454515.3 other upstream 4515466 15730946 ~ 15737781 (+) True LOC103031494
TU178958 other upstream 4515545 15730897 ~ 15737702 (+) False LOC103031494
TU178833 other upstream 4787162 15459987 ~ 15466085 (+) False ddost
TU180542 other downstream 727374 21008743 ~ 21015058 (+) True G133501
TU180543 other downstream 728538 21009907 ~ 21015916 (+) True G133502
TU180545 other downstream 730361 21011730 ~ 21017977 (+) True G133503
TU180554 other downstream 787947 21069316 ~ 21074051 (+) True G133509
TU181318 other downstream 3373991 23655360 ~ 23657642 (+) False LOC103037602

Expression Profile