RNA id: XR_002650899.1


Basic Information

Item Value
RNA id XR_002650899.1
length 1349
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC103029913
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 15593395 ~ 15635911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGATGGACAGCGGTGAGGAGGTTCACTGGTCTCAGGCCTGGAAACCTGTAGCCTCTCCCCCAGAGTCCAAACCCTGGAAACATCAGTGGATTTTCATAAAGTGCCTTTTGCTAATTTGCTGTCTCATCCTCGGTTTCCCCTTCCCCCTGCTCCCTCGACTGAAGCCTTTTTTGCTCCGCCAGCCGAGCGTCCAGACATAAGCAGATTACTGTGGGAGATCCAGAGTGATGGAATGGCAGGGGTCCAAGAAGAACGCTGAAGGttagttacatttacatttatatttatatttacaggaTTTATCAGacacccttatccagagcgacttacaacagtgcttcagtGTTTACTTTAAATATCTATAGCTCTGTAGCACTGGGTCTTCTTGTCAAAGAAAGTCTCCATTCCTTTGAGGACCTCAGCTGTAATCCTACTAACTAGCTCGTCCGTGCTGCTGCCACACGCCAAGTCGCAATCCATTTATAAGTGTCGCCTGATGAACATTATACTGACTCAGCAGGACAGTACTAAAAATCAGTGTAGACAGGGTGAATGTAATTTTAAACTGGTGCTTTATTATACAGGTTAACACTGCAGTacatgaagcagcagcagctgacaGTTGAATAACTTAATACACctaaatactgtgttttgtgAATATACTGGAAGCTGTGGAGGACACGGGGCTGTCTGTTGGAGAGCAGCCAGTCTAAATAGCGTTCGGCAGCGAATACAGTGGATTTGGCTTCCATGTGGAATTTAGTTACCATGACAACACAAGAGAGAGAACATACTGCTGGGTAATCTTCAGACGACAAAAATGCTTCTGTCATATCTACCGTTCATCACATATTGAGCTGttgttaattattatatatttacatataactTGTGCTTCCAAAGCTTTGCTTTGAGTGTTCTTGAGTTTCTTGAATTTTGAAGGAAATTCTTCTATATTAAAAATCTTCTAAAGCTTTGAGTAACCTTCACATGATAAAACAAGTTTTCTAGTTAAACTGTACCCTATCCACTATACATTCttgagttttataaatatatatagcagaAAAACAAGTATTGCAATGTCCGTTTCATTTCCAGTATTCAACAaattatatagtataaatatgGTGAGACAAAGGTCAAAGGACagccttttatttcagaaaccaAGGGGAAATTAAACAAAAGGGAAAATGATGATATGAAATCTGAATACCCCAGCAATACCCCTATCTTTCAGCTGCCATATtccgttttttttaataaaagagtGTCCTGCAATTTTTGACTCACtatttatactatatactttgtaatattggaaaaaactgacactgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178876 lncRNA upstream 22654 15570173 ~ 15570741 (+) True G132233
TU178874 lncRNA upstream 55951 15536704 ~ 15537444 (+) True G132231
TU178853 lncRNA upstream 61926 15531131 ~ 15531469 (+) True G132211
TU178842 lncRNA upstream 110106 15482928 ~ 15483289 (+) True G132205
TU178766 lncRNA upstream 198979 15387928 ~ 15394416 (+) True G132158
TU178894 lncRNA downstream 1012 15636923 ~ 15637535 (+) True G132248
TU178899 lncRNA downstream 32297 15668208 ~ 15668737 (+) True G132253
TU178956 lncRNA downstream 94986 15730897 ~ 15737702 (+) False LOC103031494
TU178980 lncRNA downstream 175249 15811160 ~ 15814862 (+) False G132314
TU178982 lncRNA downstream 175249 15811160 ~ 15814862 (+) False G132314
XM_007246264.3 mRNA upstream 9458 15581251 ~ 15583937 (+) True LOC103030870
XM_007246258.3 mRNA upstream 17945 15535145 ~ 15575450 (+) True arhgef19
XM_022677240.1 mRNA upstream 17945 15555809 ~ 15575450 (+) False arhgef19
XM_022677239.1 mRNA upstream 64267 15504781 ~ 15529128 (+) True LOC103029593
XM_007246260.3 mRNA upstream 64855 15504781 ~ 15528540 (+) False LOC103029593
XM_022677246.1 mRNA downstream 3642 15639553 ~ 15727428 (+) False rnf223
XM_007246266.3 mRNA downstream 22564 15658475 ~ 15727428 (+) True rnf223
XM_007246275.3 mRNA downstream 634338 16270249 ~ 16272189 (+) True hes4
XM_007246276.3 mRNA downstream 634338 16270249 ~ 16272080 (+) False hes4
XM_022677248.1 mRNA downstream 760989 16396900 ~ 16409084 (+) True perm1
TU178833 other upstream 127310 15459987 ~ 15466085 (+) False ddost
TU178746 other upstream 195959 15375657 ~ 15397436 (+) False fam131c
TU178747 other upstream 217814 15364479 ~ 15375581 (+) False fam131c
TU178729 other upstream 352998 15240080 ~ 15240397 (+) True G132146
XR_002650894.1 other upstream 409828 15182350 ~ 15183567 (+) True LOC103024219
TU178958 other downstream 94986 15730897 ~ 15737702 (+) False LOC103031494
XR_454515.3 other downstream 95035 15730946 ~ 15737781 (+) True LOC103031494
TU179969 other downstream 3407583 19043494 ~ 19044186 (+) True G133076
TU180218 other downstream 4487479 20123390 ~ 20124548 (+) True G133246
TU180542 other downstream 5372832 21008743 ~ 21015058 (+) True G133501

Expression Profile