RNA id: TU200917


Basic Information

Item Value
RNA id TU200917
length 574
RNA type TUCP
GC content 0.52
exon number 2
gene id G148442
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1200285 ~ 1205400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGCTATAAGGACATGGTTGGGGGTGCCGCGTTGCCTTAGTAGTGTGGCGTGGTGTGGGAGAGGGATGCTGGAACTGCCGTTGACGAGCTTGGTTGAGGAGTTCAAATGTGCTAAGGTAGGACGTGAAATGCAGTTGTTAGGGTCAAAAGACGGGCTGGTTAAAGCAACAGCACCAGTGACTAGGTCTGGGAGAAAGTGGAATGCTCGAGAAGCTACTCAAGCCGCAAGGAGGGCACTGGAGCACAGGGATGTTGTGGGGCAGGTGCAAAATGGGAgggcaggattaggtttaggtgattcttggaaagcattcggcaaggccacatcacctgagaaaaggcgtatggttacagggtttattcgtgagcaggaggaggaagcaaggagggcaaaagcagcagggcagagtaaacaggggcagtggatgagatgggaaaGTGTAGAGAAGCGGAGAATCACctggcgagagttatggggattggatacaggccgtataaagtttcttttgggagctacatatgatgttctgccaacgccacaaaaccttgctcagtgggtgggtgaggatccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200895 lncRNA upstream 57753 1086806 ~ 1142532 (+) True G148426
TU200870 lncRNA upstream 219189 977029 ~ 981096 (+) True G148407
TU200869 lncRNA upstream 219189 978876 ~ 981096 (+) False G148407
TU200857 lncRNA upstream 232159 966069 ~ 968126 (+) True G148397
TU200861 lncRNA upstream 244434 952436 ~ 955851 (+) True G148399
TU200926 lncRNA downstream 10068 1215468 ~ 1218436 (+) True G148445
TU200938 lncRNA downstream 53685 1259085 ~ 1261071 (+) True G148455
TU200959 lncRNA downstream 132875 1338275 ~ 1339030 (+) True G148466
TU200957 lncRNA downstream 134494 1339894 ~ 1340498 (+) True G148465
TU200982 lncRNA downstream 263252 1468652 ~ 1470443 (+) True G148487
XM_007242600.3 mRNA upstream 2783 1194713 ~ 1197502 (+) False LOC103021490
XM_022679366.1 mRNA upstream 7641 1122015 ~ 1192644 (+) True LOC103022131
XM_022678625.1 mRNA upstream 146350 991084 ~ 1053935 (+) True LOC103028630
XM_022678614.1 mRNA upstream 503590 680199 ~ 696695 (+) True lhx8
XM_022678613.1 mRNA upstream 503590 681971 ~ 696695 (+) False lhx8
XM_022678633.1 mRNA downstream 196623 1402023 ~ 1413005 (+) True LOC103027172
XM_022678636.1 mRNA downstream 242055 1447455 ~ 1460722 (+) True LOC107197232
XM_022678637.1 mRNA downstream 259257 1464657 ~ 1481526 (+) True LOC103026285
XM_022678638.1 mRNA downstream 318201 1523601 ~ 1535483 (+) True proc
XM_022678639.1 mRNA downstream 318202 1523602 ~ 1535483 (+) False proc
TU200913 other upstream 2708 1194535 ~ 1197577 (+) True LOC103021490
trnav-aac_10 other upstream 217519 982694 ~ 982766 (+) True trnav-aac_10
TU201123 other downstream 907273 2112673 ~ 2114465 (+) True G148599
TU202027 other downstream 2799518 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 2921549 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 2953800 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 3087083 4292483 ~ 4386634 (+) False LOC111194484

Expression Profile