RNA id: TU201080


Basic Information

Item Value
RNA id TU201080
length 301
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G148566
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1997291 ~ 1997591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctgtaagtctttagctgacactctaggattcttcctcacctcattgatcattctgcgctgtgctcttgcagtcacctttacaggacgaccacgaCTAGGGAGAGTAGCTCcagtaacagtgctgaactttctccatttgtagagcgtctgtcttaccgtggacacatgaacatcaaggcttttagagatacttttgtaaccctttccagcttcatgcaagtcaacaattcttgaatgtaGATCTTCTaaaaaaacttgattttttGTGCTgagaggcatgattcacatcaagcaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201079 lncRNA upstream 6515 1990564 ~ 1990776 (+) True G148565
XR_002651075.1 lncRNA upstream 7900 1983613 ~ 1989391 (+) True LOC111194451
XR_002651076.1 lncRNA upstream 7900 1983627 ~ 1989391 (+) False LOC111194451
TU201054 lncRNA upstream 194986 1797408 ~ 1802305 (+) True G148546
TU201035 lncRNA upstream 284835 1697084 ~ 1712456 (+) True G148531
TU201106 lncRNA downstream 65643 2063234 ~ 2063906 (+) False LOC103032064
TU201107 lncRNA downstream 70011 2067602 ~ 2067891 (+) True G148586
TU201111 lncRNA downstream 79015 2076606 ~ 2087733 (+) True G148589
TU201115 lncRNA downstream 92357 2089948 ~ 2091693 (+) True G148592
TU201116 lncRNA downstream 92762 2090353 ~ 2092844 (+) True G148593
XM_007232766.2 mRNA upstream 36746 1956162 ~ 1960545 (+) True LOC103031003
XM_022678653.1 mRNA upstream 94837 1897473 ~ 1902454 (+) True LOC111194472
XM_022678652.1 mRNA upstream 110710 1867123 ~ 1886581 (+) True LOC103035142
XM_022678645.1 mRNA upstream 329727 1640297 ~ 1667564 (+) False LOC103034819
XM_022678655.1 mRNA downstream 6008 2003599 ~ 2193725 (+) True LOC103032064
XM_022678658.1 mRNA downstream 6008 2003599 ~ 2193725 (+) False LOC103032064
XM_022678656.1 mRNA downstream 6009 2003600 ~ 2193725 (+) False LOC103032064
XM_022678657.1 mRNA downstream 6009 2003600 ~ 2193725 (+) False LOC103032064
XM_022678662.1 mRNA downstream 6009 2003600 ~ 2193725 (+) False LOC103032064
TU200917 other upstream 791891 1200285 ~ 1205400 (+) True G148442
TU201123 other downstream 115082 2112673 ~ 2114465 (+) True G148599
TU202027 other downstream 2007327 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 2129358 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 2161609 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2294892 4292483 ~ 4386634 (+) False LOC111194484

Expression Profile