RNA id: XM_022678655.1


Basic Information

Item Value
RNA id XM_022678655.1
length 4724
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC103032064
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2003599 ~ 2193725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGCGTCAGCGTGTTGAGGGGGCGCGCGCTGGACGGTCAGGGTGGAGTGAGTGCGCTCGCTCGCGCGCGCTGCTGGTGAATCTTCTGCAGACTGGAGTTTACTGCTCTCTGATTCTTGGGATTGCAACTGAGTGCGTGCGTGCGCGTGCGCAGAagtcagtgtgtgagtgtgtgtatgcatgcacccatacacacatgcatgcgTGTATGAGCGTGCATGCACGAGACAGAGTGACATACAGAtagctgaagtgtgtgtgtgtgggtgtgtgtgttctgtgtgatCTGTTGTGGATACTGTGCACGAGCTGTCCGAACTGAGAGAGGGTGGTCTTCCCTGGTCttaccccccccaccccctccacACCCCTGCCAGCCCGGGGCAGGAGCGCCCAAAGGGGGCATCTGAGTGTCCCCTGACCCCCCAACTCTCCAGTCTGTGTGGACCTGCCTGCGGGGGGCATTCTGCTGGACCCTGGTGGACCCCGGTGGTCCCCCTGCCAGTGTGAACATGCCCGTCCGGAGAAAAGaTGCACAGCGGGCTCTGCTGCTGTTGGAGGAGTACAGGACGAAGCTCAGTCACGCTGAGGACCGACAGCTGAGGAGCTCCATCCAGAGAGTCATCGACATCTTCCAGAGTAACCTGTTCCAGGCGCTCATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGATAATCAGAAATGCGGGGATTCGCTGAGGGTGGTGGACGTGATGCCGCCCGTCAACCTGTGGGACTTCTCCAGCATCCAAAGCACTACGGTTACTTCCGACACCCTGCCCAGCCTTAGCACCAGCATCGAGGACTCTCCTCTCCTAAATGAAATCCTGCATGTGCTCGCTAAAGCCAAAGCGTCCCCCGCCGAGCTCCACCAAAAGTACCGACACCATGACGAGGACACGACTCCGCAGGAGCAGAGCTCCCCCCCGCTCACGGACGAGGGTCCGGGCCCGGAGCTGGTCCAGGTGGCCGAGAAGAACATTTCTCAGATCGAGAACGTCCACGGCTACGTGGCCCACGCCCACATCTCCCCGATGAAGGTTGAGTCGCTGGAATGCATCTTCGACGGGCCGCCCACGGTGGGGAGCGAGGACAGCCCTCCCCCCACCCCCGCCTCCCTCTACCCTCAAAGCCCCATGACCATCCAGGCAAATCCACCCCCTGTTGTGGTGAATACAGAGAGTCTGGATTCAGCCCCATACgtgaACGGCACAGAGGCGGACTATGAGTACGAGGAGATCACACTTGAGCGAGGTAATTCGGGGCTGGGCTTCAGCATCGCAGGCGGCACGGATAACCCGCACATCGGAGAGGACCCCAGCATCTTCATCACCAAAGTCATCCCAGGGGGCGCTGCAGCTCAGGACGGGAGACTTCAGGTGAATGATGTAATCCTGCGAGTGAATGAGGTGGACGTTCGGGACGTGACCCACAGCAAGGCGGTGGAGGCGCTAAAGGAGGCGGGGTCACTGGTCAGACTCTACGTCAGAAGGAGAAAGTCCGTCTCGGAGAAAGTGGTCGAGATCAAACTGGTTAAAGGGCCCAAAGGGCTCGGCTTCAGTATAGCAGGGGGCGTGGGGAACCAGCACATCCCAGGAGACAACAGCATCTACGTCACCAAAATCATAGAGGGAGGAGCTGCACACAAAGATGGGAGGCTGCAGATAGGAGACAAACTTATGGCTGTGAACAGCGCCTGTCTAGAGGAGGTGACCCACGAGCACGCCGTGACTGCCTTGAAAAACACTACAGACGTGGTCTACTTGAAAGTGGCTAAACCCAACAGTGTCTTCATGAACGACAGCTTCGCCCCTCCAGATATCACCAACTcgTACTCTCAGCACATGGAGAACCATATCAGCCCCCCGAACTTCCTGAGCCAGCCGCTGCCCCCCGCGCCCTCCGGCCGATTCTCCCCCACCCCGAAGCCCTCGCACGGGGAGGAGGACCTGAGCAGAGAGCCCAGGAAGGTAGTTCTTCACCGAGGTGCTACAGGGCTGGGCTTTAACATCGTTGGTGGGGAGGATGGAGAGGGCATCTTTATCTCCTTCATCCTGGCGGGCGGTCCTGCTGACCTGAGCGGAGAACTGAGGAAAGGAGATCGCCTCGTCTCTGTGAATGGAGTGGACCTCCGCAGTGCCACCCACGAACAGGCAGCAGCCGCTCTGAAGAACGCCGGCCAGACCGTCACTATCGTCGCCCACTACAGACCAGAAGaGTACAGCCGGTTCGAGGCGAAGATCCATGACCTGCGGGAGCAGATGATGAACAGCAGTATCAGCTCGGGGTCGGGCTCTCTGAGGACCAGCCAGAAGAGATCTCTATACGTCAgGGCACTGTTTGATTATGATAAGACTAAGGACTCGGGTTTACCCAGCCAGGGACTGAACTTTAAATTCGGAGACATCCTGCACGTGGTGAACGCCTCTGATGATGAGTGGTGGCAGGCGAGGCAGGTCACTGCGGAGGGAGAGGACGAGGAGCTGGGGGTCATCCCCAGTAAAAGAAGAgtggagaagaaagagagagccagGTTAAAGACAGTCAAGTTCAACTCTAAGTCACGAGACAAAGGGGAGAACCAAGACGACTTGCTTTCCAAAGGCCAGAAGCATGTGACCTCTAATGCCAGTGATAGTGAAAGTAGTTACCGTGGGCAGGAGGAATACGTCCTCTCCTACGAACCCGTCTGTCAACAAGAAGTAAACTACACTCGTCCGGTGATCATCCTCGGCCCGATGAAGGACAGAGTCAACGATGACCTGATATCAGAGTTCCCAGACAAATTCGGCTCCTGCGTTCCTCatACGACCCGGCCGAAGAGAGACTACGAGGTGGACGGGAGAGATTATCATTTCGTTGTTTCTCGAGAGCAGATGGAGAGAGATATTCAGGACCATAAGTTCATCGAGGCGGGTCAATACAACAACCACTTATACGGTACCAGCGTGCAGTCTGTGCGCGAGGTGGCTGAAAAAGGTAAACACTGCATTCTAGATGTATCAGGCAACGCCATCAAGAGACTGCAGGTCGCTCTGCTCTACCCCATCGCTATCTTCATCAAACCTAAATCAGTGGAGAACATCATggagATGAACAGGAGACTGACGGAGGAGCAGGGGAGGAAAACGTACGACAGAGCCATGAAGCTGGAGCAGGAATTCACAGAGCACTTCACAGCCATCGTCCAGGGAGACACCTTGGAGGAAATCTACGATCAAGTCAAGCAGATCATCGAGGAGCAGTCCGGTCCATTCATCTGGGTACTATCCAAGGAGAAGCTATGAGAAGCTGCAGAGCTCCATCCATCCTCCCCtcttttcttccttccttccttcttttcttcctcctgtttttttatcggttttatttattgaatcgtttctttttttttcctaagcGACGTAATACCTGATCCTGCAGTCTTCGCCCCCTTCCTTTTCCCCCTCCCCTCCAattcaatccaatccaatcccgGATCACGAtcccatctatctgtctctctctcactctctgtctctctctctctccaagagagagagaccttcTTCATCACCAGTAACTCCTTACTTACTGCAACTTTACAGTAGGTGTTCCACAGGGGTGGGTAATGGGCCCATTCTGATCTTCGGATCTTCTGATCTTCcagctttttttaaaagagagagagaaagagagagacaaagagagagagagaggtgggtgGGCGGGGTCTGAGTGGAGTGGGCGGGGGCTTAGCACCATTCGAAAACGGGCCTTTGAAAACGGTACAGTTCCTTAATGTTTAAGGGAGGTTACTTCGTacggaagaagaagaagaatgagaagaaaaggaagaagaagaaggaggaggaggaggaggaggagaaataCATAAAGACAGACTGAAGCtggatcacatttttttttctctcttttcagtctttttctttttgtttgttttttcttttctttccttgtgttgaaatgatgatgatgatgatgatacagATACACAGctgatacacagacacacacacacaaacactaacacagGTTCTCAGGCTTTGGAAATCATCAAATCATCTGTCAAATAACAGATAAAAGTTggataaaagttgtttttaaacagaaaaaaaaaatcacaaaaagcaAAACTTTGCACGTTATAGCTTTAAGAGCATGTGTTCTTCTTCTGcgtttttcttgttgttttttttctttcttttccttttctttccgCCATAGTTCCCACCTGATGTGCTAGTTTTCAATACCAATACATTTATCGCAGTAGTTTAtctcatgtttctcttttattttcctcATTCGTTTGTTATTCTGAGTGTTGCCGTTCatattttgctcttttttttgtttgtttgtttgttaaaagTGTCCATGTTAGGgagcttttcttttgtttcttttgttcattttttcatttttttttttttcgtttcttTCGATCACGTCGACGTCGGTTTTTCTAAAGCTGTGATCAGTGTCTTACATTAACGTTTTGATTTTACACGTAGGAGAATCTGCCATTTGTAAGGAACTGCCATTTACGAGATGTTGGTCTGCGTCTCGCGGCTCCGGTTGCCAACGCGTACGTGAAAGAAAacagtttattgttttattaatgaaaTCTTAACAGATATATTTAACCCTCCATGAACTGCCTATTTTGTTATAATAAAAGTCTATATTGAACTCTA

Function

GO: NA

KEGG:

id description
K12076 DLG1; disks large protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201080 lncRNA upstream 6008 1997291 ~ 1997591 (+) True G148566
TU201079 lncRNA upstream 12823 1990564 ~ 1990776 (+) True G148565
XR_002651075.1 lncRNA upstream 14208 1983613 ~ 1989391 (+) True LOC111194451
XR_002651076.1 lncRNA upstream 14208 1983627 ~ 1989391 (+) False LOC111194451
TU201054 lncRNA upstream 201294 1797408 ~ 1802305 (+) True G148546
TU201140 lncRNA downstream 18840 2212565 ~ 2266924 (+) False G148608
TU201149 lncRNA downstream 54616 2248341 ~ 2250594 (+) True G148610
TU201144 lncRNA downstream 71410 2265135 ~ 2266924 (+) True G148608
TU201156 lncRNA downstream 137867 2331592 ~ 2332962 (+) False tnk2
TU201162 lncRNA downstream 170900 2364625 ~ 2367099 (+) True G148618
XM_007232766.2 mRNA upstream 43054 1956162 ~ 1960545 (+) True LOC103031003
XM_022678653.1 mRNA upstream 101145 1897473 ~ 1902454 (+) True LOC111194472
XM_022678652.1 mRNA upstream 117018 1867123 ~ 1886581 (+) True LOC103035142
XM_022678643.1 mRNA upstream 336035 1639309 ~ 1667564 (+) False LOC103034819
XM_022678668.1 mRNA downstream 34801 2228526 ~ 2261643 (+) True LOC103035460
XM_022678677.1 mRNA downstream 99907 2293632 ~ 2403354 (+) False tnk2
XM_022678675.1 mRNA downstream 99907 2293632 ~ 2403354 (+) False tnk2
XM_022678670.1 mRNA downstream 137895 2331620 ~ 2403354 (+) True tnk2
XM_022678669.1 mRNA downstream 139455 2333180 ~ 2403354 (+) False tnk2
TU200917 other upstream 798199 1200285 ~ 1205400 (+) True G148442
TU202027 other downstream 1811193 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1933224 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1965475 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2098758 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 2118886 4312611 ~ 4386634 (+) False LOC111194484