RNA id: TU201144


Basic Information

Item Value
RNA id TU201144
length 1735
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G148608
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2212565 ~ 2266924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacagctatgaacaaacactgtctctgctgctccgtGCTGTTGACATGCACGgtctgtgcagcgttcactgcttgcaGCCACTCTTATAGCTAGCAGTTCAAACACTCTGGTgcaggaagagtcacgtctgGTCTGAActtgatctggtctcgatccgactAAGCTAAACTGATGATAAGGCGCAGATATATTAGCCAGAGAAAGCTAATTagttaccacagctatgaacaaacgctgtttctgctgctccatgcacagtctgtgcagcgttcactgctcgcagccacTAGTATAGCTAGCAGAGTTGCgtttggctgacccacatggcaatagctttagcctttagctctgattaacatgattaaggactAAGTCTGttcagtttcagcagtaaagAAGAGAATTAGAGTTAGTCTGACAGGTAAagtagtgcagtaataaagtcattaatgagataaagataaaataaaaaaagcaatacaGAGCAATTAGTTACCACAGCTATGagcaaacgctgtctctgctgctccatgctgtttacacccacagtatgtgcagcgttcactgctcagtttcagcagtgaagtgTAAAATCCTTCAGATATGTAAAATACCAGCATTAAATCATGTTCTGCAGGACCGTTCTCTGGCGTCTCACTTTTGGGGCAGTTTTTATCCTTCCTGATCCTAATAAACATTATCGGGAGCAGCGTCTTCCATAATGTGAAGAAGAAGATGGTAGTTTTTGCCTACCAGCGTGTTGATATCGAGGGCAGTGCCCCTCATATTTCACTGTAGGGTGGATGAAGTTATCGGGAACAGTGTTTCCCATAATGTTGTACATATATTATCTGCATTCACACACAGTAATCATAATCACGATATAACCGTAATAACCCTAACGCGTGTTTTTCGGCTGTTAACCGCTTCTTTTTCCCGCAGTTGTGAATTCAAGCGCTGATTATgatgattaaataaatgaaacaaaaatcaGGAAAGTCGTAGCAGTGTAGATCGTACAGAAAtgcactgtgtgatttttattgTGATGGGCATTTGTATGTTTCTATACtacatattgtttttaattttctttaattttctgactttattttatgttcttgtttttttcgaCATTTCGGCTTTTTAGATTCGATATTAGcgctttgtttctgtttttacaacctaactatattgccaaaagtgttCACTGGCCTGCATTACGTTTAGATATATTTGCATTGCTTTGttatatcactgacagttggctgtggaatatttagtagtgagtagtgaaatttcaccaCTGGACACAAATGCACAGTTGCTGCATTCTATtcattgagcatctgtggggcatcctgaGAGggcgaatacttttggcaatacactttactttactataaTTCTCTTTTCATTAGATTTTGACCTTAAAAAAacctttacatgttaaatattcCAAGAGTTTTAGGATAGTAATATATTTGACACAGAAATAATATAACCACTTGTCATGTAAAATTCAAATTGAATACTTTAGTCATGAATAAAGTAagattttgttctgttttttgtttgtattttgcatttttgcattttgcctGTATCTACAAAAGAAACCCCAACAAAACCAGGtatttgttaataataatattactatacAGTTCTGTAAATCGAATTCAGCACTCCAagctttctgtttctgtttgaaGGATTTTCAATAAATAAACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201149 lncRNA upstream 14541 2248341 ~ 2250594 (+) True G148610
TU201092 lncRNA upstream 75848 2135450 ~ 2189287 (+) True G148571
TU201133 lncRNA upstream 131041 2132945 ~ 2134094 (+) True G148606
TU201131 lncRNA upstream 136403 2126045 ~ 2128732 (+) True G148605
TU201130 lncRNA upstream 136403 2127126 ~ 2128732 (+) False G148605
TU201156 lncRNA downstream 64668 2331592 ~ 2332962 (+) False tnk2
TU201162 lncRNA downstream 97701 2364625 ~ 2367099 (+) True G148618
TU201163 lncRNA downstream 98984 2365908 ~ 2366671 (+) True G148619
TU201167 lncRNA downstream 131151 2398075 ~ 2398729 (+) True G148621
TU201151 lncRNA downstream 136843 2403767 ~ 2409372 (+) False G148611
XM_022678668.1 mRNA upstream 3492 2228526 ~ 2261643 (+) True LOC103035460
XM_022678664.1 mRNA upstream 71410 2003602 ~ 2193725 (+) False LOC103032064
XM_022678677.1 mRNA downstream 26708 2293632 ~ 2403354 (+) False tnk2
XM_022678675.1 mRNA downstream 26708 2293632 ~ 2403354 (+) False tnk2
XM_022678670.1 mRNA downstream 64696 2331620 ~ 2403354 (+) True tnk2
XM_022678669.1 mRNA downstream 66256 2333180 ~ 2403354 (+) False tnk2
XM_022678672.1 mRNA downstream 66256 2333180 ~ 2403354 (+) False tnk2
TU201123 other upstream 150670 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1059735 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 1737994 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1860025 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1892276 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2025559 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 2045687 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU25755 True 2281 lncRNA 0.35 2 CI01000003 742302 ~ 744603 (-)
eurasian perch (Perca fluviatilis) TU154346 False 2187 lncRNA 0.36 1 NC_053122.1 13949967 ~ 13952153 (-)
eurasian perch (Perca fluviatilis) TU25755 True 200 lncRNA 0.39 1 NC_053113.1 22815781 ~ 22815980 (-)
tiger barb (Puntius tetrazona) TU154346 False 388 TUCP 0.47 3 NC_056713.1 8632341 ~ 8633422 (+)