RNA id: TU201149


Basic Information

Item Value
RNA id TU201149
length 1120
lncRNA type intronic
GC content 0.40
exon number 3
gene id G148610
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2248341 ~ 2250594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACTgcccagcaacaccttagcaatgactttagatatgataaaaaaaactgcctAACAACCATTTAACAGCAACTAagaaaccacctggaataccttaGAAACTGCCTATGAACACCTAAGAAACCActgtctagcaaccacttaggaacgTCTTGGAAACCACTATAGATATGTTAGTaattgcctagcaaccatttaacaACACCCTAACaacaacacctaagcaaccacctggtataccttagcaactgcttagcaataaTTTAGCAATCACCTGGactacctagcaacaacttTAGATATGATAGCATTTGCAAAGCAACCACATAACAAAACCCTACTGACCACCTGGAATACTTTGGCAACTGCCCAGCAACAacttggcaaccacctagcaaccactttaagtATGAtcgaaactgcctagcaaccactgccTAACAACACCCTACTGGTCTCTTAGGCTCAGGTACTTTGGATATGATgggtgttgctaggcaattTCTAAGCAATactttagcaactgcctagcaacacctcagcaattTCTGTAGATATGATAAaaaaactgcctagcaaccatttaacaGCACCTAagaaaccacctggaataccttaGAAACTGCCTATGAACACCTAAGAAACCActgtctagcaaccacttaggaacatCGTAGAAACCACTATAGATATGTTAGTaattgcctagcaaccattttACAACACCCTActgaccacctggaataccttaTTAAATAactagtaacaccttagcaataaCTTTAGATATGATAGCAACATCTTCGCAACCATATGGAATACTTTAGTAACTGCCTAggaacaccttagaaaccactaTAGATATGTTAGTaattgcctagcaaccatttaacaACACCCTActgaccacctggaataccttaGCAAATGCTTAGTAATAATtgagcaaccacttagaaacacttAGGAATACCTTATCAACCATGTTCAACATTTATTaactttttcattattattcctgcaacaaaatataaaacgtTTCCCTCAGCAACTACCTGAAAtgccttagcaactgccttgcaACACCtgggcaaccacctagcaacagcatagcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201092 lncRNA upstream 59054 2135450 ~ 2189287 (+) True G148571
TU201133 lncRNA upstream 114247 2132945 ~ 2134094 (+) True G148606
TU201131 lncRNA upstream 119609 2126045 ~ 2128732 (+) True G148605
TU201130 lncRNA upstream 119609 2127126 ~ 2128732 (+) False G148605
TU201126 lncRNA upstream 128222 2118680 ~ 2120119 (+) True G148602
TU201144 lncRNA downstream 14541 2265135 ~ 2266924 (+) True G148608
TU201156 lncRNA downstream 80998 2331592 ~ 2332962 (+) False tnk2
TU201162 lncRNA downstream 114031 2364625 ~ 2367099 (+) True G148618
TU201163 lncRNA downstream 115314 2365908 ~ 2366671 (+) True G148619
TU201167 lncRNA downstream 147481 2398075 ~ 2398729 (+) True G148621
XM_022678664.1 mRNA upstream 54616 2003602 ~ 2193725 (+) False LOC103032064
XM_022678677.1 mRNA downstream 43038 2293632 ~ 2403354 (+) False tnk2
XM_022678675.1 mRNA downstream 43038 2293632 ~ 2403354 (+) False tnk2
XM_022678670.1 mRNA downstream 81026 2331620 ~ 2403354 (+) True tnk2
XM_022678669.1 mRNA downstream 82586 2333180 ~ 2403354 (+) False tnk2
XM_022678672.1 mRNA downstream 82586 2333180 ~ 2403354 (+) False tnk2
TU201123 other upstream 133876 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1042941 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 1754324 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1876355 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1908606 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2041889 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 2062017 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile