RNA id: XM_022678674.1


Basic Information

Item Value
RNA id XM_022678674.1
length 4562
RNA type mRNA
GC content 0.54
exon number 13
gene id tnk2
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2293632 ~ 2403354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGATGAAAAGCTTTGCTGGACACTGTCTGGACCAAACAAAGACAAAAGGTTACCTTCCTGTACCCGTTCCTGGTGAGTTCTGACCATAAGACTGGTCAACAGCTGTGTTGGTGTGACGAAAAAGAGGCTACATGTTGAGGAAAAGCGTTGCTGGAccttgtgtgagtgtgaatagAAGGCTACAAGCTGATGAAAAGCTTTGTTGGACACTGTCTGGACCCAACAAAGACGAAAGGTGACCTCCCTGTACCTCTAACCGTTGAGTTCTGACCATAGGACTACTCAACAGCAGTGTTGGTGTGAAGAGAAAGAGCCTACAAGCAGATGAGAAGCTTTTGTTGGATGCTTATTGGACCAAACAAAGACTAAAGGTGACCTCTCTCTACCTGTACCTATTAAGGTCTGTCCACAGGACGTTTCAGCATTTATCttggaagaaagaaagaaaggctaAAAACTGACTGAAAGCTTTGATAAACCCCATCTGGTCCAAACAAAGATGAAAGGTCACCTCCCTGTATCTGTACCTGCTGAGTTCTTGCCACAGAACTGGTCAACAGCTGTGTTGAAAGTGAAGAAGGAGGCTGCAAGCTGGCGGGACCAAACAAAGACGAAAGGTGACCTCCCTGTACCTGTACCTGGTCAGTTCTGACCATTGTACCGCTCAACGGCTGAAAGAAGCTACCAGCTAGCAAAAAGCTTTAGAAGACTTTGTCTGGACTAAGTAACCAGTAAAGATGACCTCTTATACCTCTTGTACCTTGTAAGTCTTGACCATAGGACTGGTCTACAGCTGCTTTGGTGTGAAAAGAAAAAGGCTTCAAGCTGACAAGACTGGACTAAACAAAGGTAACCTTCTACTACTTTGTGAGTTTTGACCACAGGACTCTTCGTTAGCTTTGTTGGTATAAAGAGCGAGGCTACAAACCAACAAAAAGCTTTGCTTGACCTCCTGATGACCATGTTGTGAACCTTAAACCCTCACTGGACCAAGCAAGGACAAGGGGTGACCTCATTCTACCTTCTGAATCCTGAGCAAAATTGACCAGACTGGTCAATATCTGTGTATGGGTAAAGGTAAAGACTGGACATCACATCTGTTGACAAGAAGCTTTTCCTGACTTTATGGCCACATCGTTAgcctaaaacctaaaaactgTATGGATGGGTAGCCTCCTTCTACCTTCTGAATCCTGACCACGTGACTGGTCAGCAGCTGGTCTGAACTGAACTGACCAGTATTCACCATGTTGGTGTAAATAGGTTTGCCAAAAAGTGACGAGCTAAAAGGACAATCCCTGTCTGGACTCTACGATTGACCTCAACATGGGGGACACTGCAGAGTACCAACGGCTCCCGAGCGAGTGTGACGAGGACGAGGTGTTGGACGAGAAGCTGGGCAGCAGTATGCAGTGTGATGAAGGCACCGAGtggctgctggagctgctgatggaggtCCAGTTGCAGCAGTACTTCCTGAGGATCCGGGATGACCTCAACGTCACTCGCCTCTCGCACTTCGACTACGTGAAGAACGAGGACCTGGAGAAGATCGGCATGGGTCGGCCTGGGCAGAGGAGGTTGTGGGAGGCAGTAAAGAAGAGGAAAGCCATGTGCAAGCGCAAGTCCTGGATGAGCAagGTGTTCAGTGGGAAGAGACCGGAGGGAGATTTCCAGCCTCAGCCGGCGAGCACCTTCCGGAAGCTCTCCCCCACGCCCCCCGCCGACGAGCAGCCGCAGGCCCTCACCTGCCTGATCAGCGAGAAAGAGCTGGAGCTCTGCGAGAAACTGGGAGACGGATCATTCGGCGTCGTGAAGAGGGGGGAGTGGTTCACCCCCAACGGGAAAGTGCTGAACGTAGCTGTGAAGTGTCTGAAGACGGATGTGTTGAATCAGCCGGACGCTCTGGACGATTTCATCCGCGAGGTCAACGCCATGCACTCTCTGGACCACCAGAACCTCATCCGCCTGTACGGAGTCGTCCTCACGCACCCCATGAAGATGgTGACGGAGTTGGCTCCTCTGGGTTCTCTGCTGGATCGTTTGAGGAAGAATCAGGGTCACTTCCTGATCTCCACTCTGTGTCAGTACGCTATTCAGATAGCTAATGGAATGGCCTACCTGGAGTCCAAGCGCTTCATCCACCGTGACCTGGCGGCCAGGAACATCCTGCTGGCCTCCAGCGAGCTGGTAAAGATCGGAGACTTCGGCCTGATGAGGGCGCTGCCCAAGAACGACGACCATTACGTCATGCAGGAGCACCGCAAAGTCCCGTTCGCCTGgTGTGCTCCAGAGAGTCTGAAGACGCGCACGTTTTCTCACGCCACAGACACGTGGATGTTCGGCGTGACCCTGTGGGAGATGTGCACTTATGGGCAGGAACCTTGGCTGGGCCTCAATGGCAGTCAGATCCTTCATAAGATCGATAAGGAGGGCGAGCGCCTGCCCAAGCCGGAGGACTGTCCTCAGGACATCTATAACGTCATGCTGCAGTGCTGGGCTCAGAAACCTGACGACCGGCCCACCTTCATGGCCCTGAGGGAGTTCCTGGTGGAGACCATGCCCACCGACATGAGGGCTTTGCAGGACTTTGATGAGCCGGACAAGCTGCTCATCCATATGAATGATGTCATCACCATCATTGAGGGCAGggcGGAGAACTATTGGTGGCGAGGGCAGAATAAGCGAACTCTGAAAGTCGGGCAGTTCCCCCGAAACACGGTCACCTCCGTCGCCGGCCTCTCAGCCCACGACATCAGCCGACCCCTGAAGAACAGCTTCATCCACACGGGCCACGGAGACTCCAACCCTCACCGCTGCTGGGGCTTTCCTGACCGGATAGACGATCTGTATCTCGGGAACCCCATGGACCCTCCGGATGTTCTGGGGCTGGATCTGAACGCTCCTCGGCCCACTCAGCTTCCAGGACGAGCTAAAAAGCCAACATATGACCCAGTTACGACTGAAGACGACGACCTGACGTCCTCTAGCCTGAAACTGCTCTCGTTGAAGAAAGCCGGCATGAAGGGCCTCAAACTCAAGCCGTCCGCTTGGGTCCTGGCCACCAAGCCCGTTTACGGGCTTCGAACCCCCGGAGGCGGGACTCCTACGGAGGTTTCGCTCATAGACTTTGGGGAGGAATTCCCCTCAGCTACCCCTTCCCCCTCCCCTGTGGTGGAGGCTCATGTTCCTACCCTTGCCAGACTTTCTCTGGATGCTGAGAACCTTCTGGACGGAACTCCTCCACAGAGTCCCTCCCAAACTCTACCTCGCCCACTCCACCCGACGCCAGTGGTGGACTGGGATTCCAGGCCCCTCCCTCCTCCCCCGGCGTACGACGATGTAGCACAAGACGAAGACGACATCGAAGTCAGCTCGATCAACAGCGCCGATCAACAGGGATCTCCACGGGCAAACTGCACGCCTACGGATGAGGATAAGCCTCAAATCGAGGACAATCTTTTCCTGCCCAGAGAGCAAAGTCGTGCCAGGACTTTCTCCCAATCGGCGGAAATCTTCCAGGAGCTACAGCAGGAGTGCATGAGGCGCCTCAACGTTCCAAACCCTGAAATTTATCGCCAGATAGTCCTCAATACGTCCGAAGACAGACCTCAAATCCCACCTCGCATCCCAATTCCTCCTAGACCTCCAAAGAGCCAAGGTGCGGAATATGCCCGTTGGTCAGGCGAACTTTCACCAACCTCTGGAATTGAAGAGAACAAGGAACATCCTCCTCAAATCCCCCCAAGAGACCCTTTGTCTCAGCCTGGTTCTCGTACCCCCAGTCCAATGGGACTCCATGTAGGTAGTCACTGCTCTCCAGCCTCAATCTACGGCTCTTCCTACCTCTCCTCCAGTCCCGGGAAGCTCATGCCCACCACGCAAAGCTTCGCCTCGGACCCTAAGTACGCCGCCCCCAAGGTCATACTGGCACAAGGCAAGGACAAAGAAGCGACCAAAGGGCCTTGCATCTTGCCCATAGTACGAGACGGCAAGAAAGTCAGCAACACGCACTACTACCTCCTGCCAGAGAGGCCCACGTACCTCGATCGATACGACAAGTTCCTCAAAGAGTCGGAGACTGCAGAAGAGAGGCGGACCCCCAACACTGCCACGGTCCGGCCCATGGTCCATCAGCCACCACAGCAGCAGctgcaccagcaccagcagggGGAGCTTAAGTCCAACTTCTCGTCCAACAACAACAGCACTCTAACGGGTTCTTTAAGCAGAACACCGGGCATGAAGAACTCCATGAGCCTCCCTAGAGTGACCACCGATGGGTCGGTCACCAGGGTGGAGGGAACCTGCACCCCCGACAGAGTCAAACTGGTGCAGGAGGCGGTACATGGCGTGACTATTGAAGAATGTCAGACGGCTCTGCAGAACCACAGCTGGAACGTGCAGAAGGCTGTGCACTATCTGAAGgTGGAGCAGCTCTTCTGTCTGGGCTTGAAGACGAGGGTGGAGTGTCATAAGATTCTGGAGATGTACGACTGGAACCTGGAGCTGGCCAGCACTCAGCTATTAGACTCTTACGGCTCAGTTAAACAGAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201156 lncRNA upstream 218 2331592 ~ 2332962 (+) False tnk2
TU201140 lncRNA upstream 66256 2212565 ~ 2266924 (+) False G148608
TU201144 lncRNA upstream 66256 2265135 ~ 2266924 (+) True G148608
TU201149 lncRNA upstream 82586 2248341 ~ 2250594 (+) True G148610
TU201092 lncRNA upstream 143893 2135450 ~ 2189287 (+) True G148571
TU201151 lncRNA downstream 4513 2403767 ~ 2409372 (+) False G148611
TU201153 lncRNA downstream 4513 2403767 ~ 2409372 (+) True G148611
TU201664 lncRNA downstream 12449 2411703 ~ 2412077 (+) True G148959
TU201684 lncRNA downstream 100483 2499737 ~ 2503443 (+) True G148975
TU201737 lncRNA downstream 480735 2879989 ~ 2914529 (+) True G149008
XM_022678668.1 mRNA upstream 71537 2228526 ~ 2261643 (+) True LOC103035460
XM_022678661.1 mRNA upstream 139455 2063475 ~ 2193725 (+) False LOC103032064
XM_022678681.1 mRNA downstream 398608 2797862 ~ 2891311 (+) True LOC103030361
XM_022678682.1 mRNA downstream 398608 2797862 ~ 2891311 (+) False LOC103030361
XM_022678683.1 mRNA downstream 538047 2937301 ~ 2967577 (+) True LOC103027018
XM_015608782.2 mRNA downstream 594952 2994206 ~ 3002622 (+) True LOC103027938
XM_022678685.1 mRNA downstream 629129 3028383 ~ 3139358 (+) True mib1
TU201123 other upstream 218715 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1127780 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 1605664 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1727695 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1759946 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 1893229 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 1913357 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile