RNA id: XM_022678677.1


Basic Information

Item Value
RNA id XM_022678677.1
length 3987
RNA type mRNA
GC content 0.56
exon number 17
gene id tnk2
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2293632 ~ 2403354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGTGAGGAACTCAGGAACGAGGCCACCACAACATTAGGACCGAGTTAAGACTGACAACGGGGAACGGCAAGTACCTGCACGCGCCTCAGCTCCATCCGCTTGGGGTTAGTAATACTAAATCAACGTCATGCGCTCATAAACGCACAGAAAGCAGCCGGAGCGCGAGCTGCAGCACACCTGGGACCCGCACGCGCGCGTGGACTGACTGACAGAAAGTGAAGCGTCTCCACCCATCCGTACTGACACAGTCTGGCACTGAAAGAAGTCTGGCCCAGTCGAGACAAAAATACCAAACTCATTTTTCTTCTGGATGATGCTTTTCCACAGCAGACGCCTGACatgTTGCTGTAATGCAGTGTGATGGACTGAGCAGTGTATGAAGCCATGGACTGGACTCAGAACTCTTCAGAGTGTGAATACTAGCAGGCTTACAGCTTCAGTATCCGAAGCTGGGCAGCAGTATGCAGTGTGATGAAGGCACCGAGtggctgctggagctgctgatggaggtCCAGTTGCAGCAGTACTTCCTGAGGATCCGGGATGACCTCAACGTCACTCGCCTCTCGCACTTCGACTACGTGAAGAACGAGGACCTGGAGAAGATCGGCATGGGTCGGCCTGGGCAGAGGAGGTTGTGGGAGGCAGTAAAGAAGAGGAAAGCCATGTGCAAGCGCAAGTCCTGGATGAGCAagGTGTTCAGTGGGAAGAGACCGGAGGGAGATTTCCAGCCTCAGCCGGCGAGCACCTTCCGGAAGCTCTCCCCCACGCCCCCCGCCGACGAGCAGCCGCAGGCCCTCACCTGCCTGATCAGCGAGAAAGAGCTGGAGCTCTGCGAGAAACTGGGAGACGGATCATTCGGCGTCGTGAAGAGGGGGGAGTGGTTCACCCCCAACGGGAAAGTGCTGAACGTAGCTGTGAAGTGTCTGAAGACGGATGTGTTGAATCAGCCGGACGCTCTGGACGATTTCATCCGCGAGGTCAACGCCATGCACTCTCTGGACCACCAGAACCTCATCCGCCTGTACGGAGTCGTCCTCACGCACCCCATGAAGATGgTGACGGAGTTGGCTCCTCTGGGTTCTCTGCTGGATCGTTTGAGGAAGAATCAGGGTCACTTCCTGATCTCCACTCTGTGTCAGTACGCTATTCAGATAGCTAATGGAATGGCCTACCTGGAGTCCAAGCGCTTCATCCACCGTGACCTGGCGGCCAGGAACATCCTGCTGGCCTCCAGCGAGCTGGTAAAGATCGGAGACTTCGGCCTGATGAGGGCGCTGCCCAAGAACGACGACCATTACGTCATGCAGGAGCACCGCAAAGTCCCGTTCGCCTGgTGTGCTCCAGAGAGTCTGAAGACGCGCACGTTTTCTCACGCCACAGACACGTGGATGTTCGGCGTGACCCTGTGGGAGATGTGCACTTATGGGCAGGAACCTTGGCTGGGCCTCAATGGCAGTCAGATCCTTCATAAGATCGATAAGGAGGGCGAGCGCCTGCCCAAGCCGGAGGACTGTCCTCAGGACATCTATAACGTCATGCTGCAGTGCTGGGCTCAGAAACCTGACGACCGGCCCACCTTCATGGCCCTGAGGGAGTTCCTGGTGGAGACCATGCCCACCGACATGAGGGCTTTGCAGGACTTTGATGAGCCGGACAAGCTGCTCATCCATATGAATGATGTCATCACCATCATTGAGGGCAGggcGGAGAACTATTGGTGGCGAGGGCAGAATAAGCGAACTCTGAAAGTCGGGCAGTTCCCCCGAAACACGGTCACCTCCGTCGCCGGCCTCTCAGCCCACGACATCAGCCGACCCCTGAAGAACAGCTTCATCCACACGGGCCACGGAGACTCCAACCCTCACCGCTGCTGGGGCTTTCCTGACCGGATAGACGATCTGTATCTCGGGAACCCCATGGACCCTCCGGATGTTCTGGGGCTGGATCTGAACGCTCCTCGGCCCACTCAGCTTCCAGGACGAGCTAAAAAGGAACCTCCCCCTCGGCCGCCTCAGCCAGCTTTGCTCTTTAAGAAGCCAACATATGACCCAGTTACGACTGAAGACGACGACCTGACGTCCTCTAGCCTGAAACTGCTCTCGTTGAAGAAAGCCGGCATGAAGGGCCTCAAACTCAAGCCGTCCGCTTGGGTCCTGGCCACCAAGCCCGTTTACGGGCTTCGAACCCCCGGAGGCGGGACTCCTACGGAGGTTTCGCTCATAGACTTTGGGGAGGAATTCCCCTCAGCTACCCCTTCCCCCTCCCCTGTGGTGGAGGCTCATGTTCCTACCCTTGCCAGACTTTCTCTGGATGCTGAGAACCTTCTGGACGGAACTCCTCCACAGAGTCCCTCCCAAACTCTACCTCGCCCACTCCACCCGACGCCAGTGGTGGACTGGGATTCCAGGCCCCTCCCTCCTCCCCCGGCGTACGACGATGTAGCACAAGACGAAGACGACATCGAAGTCAGCTCGATCAACAGCGCCGATCAACAGGGATCTCCACGGGCAAACTGCACGCCTACGGATGAGGATAAGCCTCAAATCGAGGACAATCTTTTCCTGCCCAGAGAGCAAAGTCGTGCCAGGACTTTCTCCCAATCGGCGGAAATCTTCCAGGAGCTACAGCAGGAGTGCATGAGGCGCCTCAACGTTCCAAACCCTGAAATTTATCGCCAGATAGTCCTCAATACGTCCGAAGACAGACCTCAAATCCCACCTCGCATCCCAATTCCTCCTAGACCTCCAAAGAGCCAAGGTGCGGAATATGCCCGTTGGTCAGGCGAACTTTCACCAACCTCTGGAATTGAAGAGAACAAGGAACATCCTCCTCAAATCCCCCCAAGAGACCCTTTGTCTCAGCCTGGTTCTCGTACCCCCAGTCCAATGGGACTCCATGTAGGTAGTCACTGCTCTCCAGCCTCAATCTACGGCTCTTCCTACCTCTCCTCCAGTCCCGGGAAGCTCATGCCCACCACGCAAAGCTTCGCCTCGGACCCTAAGTACGCCGCCCCCAAGGTCATACTGGCACAAGGCAAGGACAAAGAAGCGACCAAAGGGCCTTGCATCTTGCCCATAGTACGAGACGGCAAGAAAGTCAGCAACACGCACTACTACCTCCTGCCAGAGAGGCCCACGTACCTCGATCGATACGACAAGTTCCTCAAAGAGTCGGAGACTGCAGAAGAGAGGCGGACCCCCAACACTGCCACGGTCCGGCCCATGGTCCATCAGCCACCACAGCAGCAGctgcaccagcaccagcagggGGAGCTTAAGTCCAACTTCTCGTCCAACAACAACAGCACTCTAACGGGTTCTTTAAGCAGAACACCGGGCATGAAGAACTCCATGAGCCTCCCTAGAGTGACCACCGATGGGTCGGTCACCAGGGTGGAGGGAACCTGCACCCCCGACAGAGTCAAACTGGTGCAGGAGGCGGTACATGGCGTGACTATTGAAGAATGTCAGACGGCTCTGCAGAACCACAGCTGGAACGTGCAGAAGGCTGTGCACTATCTGAAGgTGGAGCAGCTCTTCTGTCTGGGCTTGAAGACGAGGGTGGAGTGTCATAAGATTCTGGAGATGTACGACTGGAACCTGGAGCTGGCCAGCACTCAGCTATTAGACTCTTACGGCTCAGTTAAACAGAGgcgATGAGAGAAAACGTGAGGATGTCCTCGTCCTTCAATCCTCAGAGACTGATGATCATTCTGACTGAAGTTTGATCTGAGAAACACGGGAGATCAGAAGTTCCTCTTCCAGCCTGATGACGGAGTTCCCTCATGCTGCACTACTGAGTTCAGATTCGttcgtgtttttttattggtcgGTGGAAAGAGGTGGAAACCAAGGTGCTGCTGGTCCATTCGAGTTGACCCTGCTACGTTTGACTGTtgtatttgttgtgtttttgtttttaaatgttataaagaGCTTTAttatttgataaataaatgagaCGATCGGACGGAGAACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201140 lncRNA upstream 26708 2212565 ~ 2266924 (+) False G148608
TU201144 lncRNA upstream 26708 2265135 ~ 2266924 (+) True G148608
TU201149 lncRNA upstream 43038 2248341 ~ 2250594 (+) True G148610
TU201092 lncRNA upstream 104345 2135450 ~ 2189287 (+) True G148571
TU201133 lncRNA upstream 159538 2132945 ~ 2134094 (+) True G148606
TU201151 lncRNA downstream 413 2403767 ~ 2409372 (+) False G148611
TU201153 lncRNA downstream 413 2403767 ~ 2409372 (+) True G148611
TU201664 lncRNA downstream 8349 2411703 ~ 2412077 (+) True G148959
TU201684 lncRNA downstream 96383 2499737 ~ 2503443 (+) True G148975
TU201737 lncRNA downstream 476635 2879989 ~ 2914529 (+) True G149008
XM_022678668.1 mRNA upstream 31989 2228526 ~ 2261643 (+) True LOC103035460
XM_022678664.1 mRNA upstream 99907 2003602 ~ 2193725 (+) False LOC103032064
XM_022678681.1 mRNA downstream 394508 2797862 ~ 2891311 (+) True LOC103030361
XM_022678682.1 mRNA downstream 394508 2797862 ~ 2891311 (+) False LOC103030361
XM_022678683.1 mRNA downstream 533947 2937301 ~ 2967577 (+) True LOC103027018
XM_015608782.2 mRNA downstream 590852 2994206 ~ 3002622 (+) True LOC103027938
XM_022678685.1 mRNA downstream 625029 3028383 ~ 3139358 (+) True mib1
TU201123 other upstream 179167 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1088232 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 1601564 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1723595 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1755846 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 1889129 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 1909257 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile