RNA id: TU201697


Basic Information

Item Value
RNA id TU201697
length 3854
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G148983
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3054681 ~ 3143912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATACTCTAAATAACCCTGATCAGTATAATTGTGTGCATCTTCCTAACTGCACATAAATAGACAGAaatgatatcatgatatacagtattgcttcatgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgatttcttaatttacaaatgaaatgtaaaatttactgatgatgagtgatggtttggagagacatgtcatctgctggtgttgatccactgtgttttattatctaaagtcagtgcagttttgttttcccacaaaatctgctgacaactttaatggagatgcagatttcattttccagcaggacttggcacactgcccacactgccataAGTACCACTTGGTCttatatgatattctaattttctgagactctgattttggggttttcgttggctgtgagccataatcatcaacaataaaagaaataaatgattaaaatagattcttctgtgtgtaatacatctatataataatgaaataaagtaacttttcaatgatattctaattttttgagatgcaagATCCAAGTCCTTCTCAGCTGCCAATTGAACATCacatcagtggttttaatgttatggctgatcgaTGTTTAAAGTGTATATACTAAACTCTGCAGAGGAAGCTATGGTTCATTTCATGCTGGTTAATATGCTTCTGCTTCTCCTCCACTGTGATGCTCGGACACTCTGGCAtcatctctttatttttgcaaGCCTCCTCagactcttcctcctcctcctcctcttcctcagttTTCCCATAAAAGTATTGAGCTATAAGGCCTTACTGCGAACACGTCCGTAGCCTCAGTATCGATCAGTGATCAGCAGGAGTGTTGCCGGCGTGGTGGAAGCAGAGAAAACGTCTAGAACACTAAAGCCTCTCGTCACCTTCTCGTCAAAACTGCCTGAGAACCATACGCTGCCATTGGTAGGTGGTGGAGTTTTTCTTCGTATCTACATTCAATGAATCCCCtttctttatttgtatgtatttccttcatttcttttactttgtttttcgTATATCATGGTTTTTAAGtcatggctggaatctgagaaCTGAGTCTGAAACATAACGTcataaaataacagtgttcaGCATTGTCTTGACCTCCATTCACTGTGGATCTTTAGTTATAGATTAGTGATGGTTTAGTTATGCTGCGTTCCATTGAGCTCGGAAGTCGCATCTTAAAACTGGGAGTGATTTCTaacttgtgtttttaaaatatttagaattatttCCAGTTAGTTAACCAATATGGAGTCAACCATTTGATTAGTCAATTGTTTATAGCAAATTTATCTGTTTTATGGCAAATCTAGACCAAATATATACTGCTCTTTATTTCCCAGCTTAGCATTGTTGATGcattaattcagtattttttatgCACAGGTGATCAGATGCACGAGTAAGAAATTGGATAGTACAATCAGGTGTATGCCTGATTTAATAGAACACAAATGGATATAATTACTGATAAACTCTATTAGAGATGCTAAAAttattgtaatactgtaatatttttcacactataaggaatACTTTGAATAAACCTATATTTTCTGtactattttcatacataaggtccactggattataaggcgcattatgcaacactagtaaggaacacaGATgtagccatgttttccttctaattcacctgtaaagctaagctaagtaaacaaaactgtagctgtttaaaatcaaacaagtgctggaagTTAATCTAAGCATATTTTtcacctgaaaactgtttatttgggtgagaaaaacGCTTCCATTTACTTAAAGTGCTACACCTAAATGTAACtaaatgttctggtaagccGGGGCGATATTAGCTggtggttcgtcccacgtagcttgttttaacatggtagaTATTCAGGCTACAAGACGATATACTCACCTtgaaacagtgaaagagctaaccAGCGCTCAGCGTTGTTAGCAGgtaaggctaatgctgctccagcagtgctagctggggttagcagcaggctacaggccggtaatactcacctctgaatggcgaaagagctagcgtttagcgtggttagcggctaatgctaatactgctctgctctcgagtctctgtgctggataactgaactgaaactcctgtataactctgtactttagcggagtgactttactgctccttaatacctgactggtagaattcatacataaggagcactgacgatttttgagaaaattaaaggattttactgTGCAAAAAATTCGGTACCCTCATCCACTTGAAGTGTAAGCAGAAAGCTGATCGAGTCTAATAACATGGCTGGACTTTATCTATAAACAGACGCCATGTTGAGTGTTATTATCCCTAATTGGGGCttaaaaatgtcagtttttcGACATTCGAGTTTTAATGGAACGCAGCATTACTTTCTACAGACTGACTACATTACAGTGTGCATGTAGACACATTTACTGTCTGAGAGAGTATTATCACTTTATTACTGTTGGTGGAAATACTTTGGAGGCCTGAAGGTTTCTTATTCTTAATGTCTTAAAATtgatttcatttttcttttagttttatttagttttaatctgTGCACACTGTGTTTTTTCACCAGTGTTGTCAATCAGTTCTCTACAGTCCTGCTGTGTTTTTCCGAggctgtattatattataaaccAGGCGtcggcagaaaaaaaaaagaagagagtcTGCTAATAACCattgatttttggattttcttttttagtttttgttttgttttgtttttttttttttttgttttttttattccaaaaataagaaaatgttaatattcttttttttttcggggATAAGGTGCTGTTTTACCTCTTTTGACTGtctctttatttatgttttcatCGAACTTAAGACTGAACTAGGGTGTACAATCTAATATAAGAAGCCAAGAAGAGGTATAAAAAGTTATTTGAATAGAAGAAGAGAATTGTCTTTTCTATGGTTACCAGCAAAGTAGGAAAGTAGGTTTTTACAGTCGTGTTCTTTTCAACTGTTTTCAACTCTGGACGTCTCCGATCGTCTTACCGTGTTTTTTTGTCacgagaaaaaaatgaaataaaataaatgtttgtagCCTAATATAAAGAAGACTATTTACCAAAAACACGCTGTATCTTTCTGCGCTTGTTGTCcaatttagcatttttagtTTATCTTTTACGAAGAaaagataatgataatgatgatgatgatgatgatgaggatttTTCCAGATCTTCATCCTCTTCATCCTGCCGACAGTGTTTCATAAACCATGCACCCGAAACTGCGATCTCTGtatttgtatattattattatcattattaaacaTACGGAGccctttttatttcatgtagTTCAATAGAAACAGcatagaatgttttttttttatggacaaaataaaatacataaataactgaatgaataaatgaataaacacatgcATTAAAAAGTAGCTTCATACTTTGCCTTTTTAAGATTTTGTATCATTTCCAGTCATCTTGTTAACATACTCAATGCTTAGATGCACTAATGTACTTTAATGgtagtattgtattgtatgtacCGTCACTGTTACTTAAAGGCCTATTTTGTACCTTATTttcagtacataaaaaaaaaacttccaggTTCAAAGGTTTTTTCGATACGTCTTCGTTCCTTCTTTGTTTGGCATGAATGTTTGTTTGATGTATGCAGtacatttttcatggaaaacagcTGTTCACTATGTATTGCCAAGtgcttttaaaaagaaatgcatTGCTGAATAAAGATCTAATGGAACCACAG

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201764 lncRNA upstream 21614 3029730 ~ 3033067 (+) True G149026
TU201765 lncRNA upstream 21614 3029730 ~ 3033067 (+) False G149026
TU201758 lncRNA upstream 21614 3031208 ~ 3033067 (+) False G149026
TU201760 lncRNA upstream 21614 3031208 ~ 3033067 (+) False G149026
TU201763 lncRNA upstream 21614 3031208 ~ 3033067 (+) False G149026
TU201780 lncRNA downstream 79505 3223417 ~ 3274194 (+) True G149040
TU201869 lncRNA downstream 140812 3284724 ~ 3285222 (+) True G149109
TU201894 lncRNA downstream 222540 3366452 ~ 3368137 (+) True G149126
TU201899 lncRNA downstream 238031 3381943 ~ 3384833 (+) True G149130
TU201913 lncRNA downstream 277318 3421230 ~ 3463220 (+) True G149142
XM_015608782.2 mRNA upstream 52059 2994206 ~ 3002622 (+) True LOC103027938
XM_022678683.1 mRNA upstream 87104 2937301 ~ 2967577 (+) True LOC103027018
XM_022678681.1 mRNA upstream 163370 2797862 ~ 2891311 (+) True LOC103030361
XM_022678682.1 mRNA upstream 163370 2797862 ~ 2891311 (+) False LOC103030361
XM_022678673.1 mRNA upstream 651327 2346292 ~ 2403354 (+) False tnk2
XM_015608792.2 mRNA downstream 54873 3198785 ~ 3207918 (+) True gata6
XM_022678690.1 mRNA downstream 152068 3295980 ~ 3359851 (+) True LOC103030995
XM_022678691.1 mRNA downstream 152073 3295985 ~ 3359851 (+) False LOC103030995
XM_007231100.3 mRNA downstream 441333 3585245 ~ 3632868 (+) False LOC103028887
XM_007231099.3 mRNA downstream 441334 3585246 ~ 3632868 (+) True LOC103028887
TU201123 other upstream 940216 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1849281 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 861006 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 983037 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1015288 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 1148571 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 1168699 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile