RNA id: TU201746


Basic Information

Item Value
RNA id TU201746
length 3194
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC103027938
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2994206 ~ 3010066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAATatacttttattcattttcagcATCCCATTCATCACAATCTTCAGCTTCACGAACTTCAGCGTGGTTCAACTTAAAACTCAATCAAACCTCAGGCTTACAGTGCTCTATACATCTATATACAAAGAGATAAAATGTTCCCACGCAATATTGTTCatacggtatatatatatatacacagtacacacgTGTAACTTAAGGAAGACATACATATTTATGAAGGCGGAGTCTCAACTCAAAGGTAGACCTACATAAATAATAAGAACAGTAtaggaaagaaacagagagattaaACCAAACTGTACTGAGATTTgagaataatctaataatgtgtatttaactataactaatgcagcaatggatatatatatagcatagaCAGCCTGAAACTTCAGCTTCTACACACCTAGAGTGGGCTTTTAGAATcgggcatgccaaaagtcatggtcctgatgagtgccagtttcatcatattgttttaaataatctttGCGACACAACAGTGTTTGTAATTTGATCACAGTGTTACCTTAGGGCCTGGCCTTTGAAAAATAACCTTACAAATaacctgtgtaagttgtgaggtgctatcttgtgagttaTCTTGTGTTAGAGCGAGACCTATACGGAAGTTTCATTTCTAAAAGTTTCAAAGTGTCATGCATGTACAAGAATACACAATAGAAGGTGCTAATTACAGCCCGCAGTAGACAGCACAGTAGTCCCATGACttatggcatgtcagtgtgtgtcaaaaaatttggacacacatttttttttgttccctacattgtaaataaatagtaaagtgattcagactattactaacacataaggaatcatgtagtaactaaaaagtgttaaacactagctgttaacttgcggtttctgaagctggtaacgagtcctgatgagtgccagtttcatcataacattttttatggtctttgaagtgactgcacttgagaatacatTCTaaattcttgaaatgtttcagattgactgaccttcatttctttaggTATTTCTTTAAGGaaactcaagtaattaactcttgacgagttcagcacagctgttaactgaaagcaatTCTATATATGTATCACTCTAGaaatttaggtgctcttatctggggagctgttaacttgcagtttttgaggctggtaactctaatgcaCAGagagaactcttgctcttcctttcctggggtgtacctgatgagtgccattttaatcatgtttttgataGTCGTTGCGGTGagtgcacttgaggatactttctaaATTCTTGAAATGTTctgaattgactgaccttcatttttttaaaggtatattttatttacttagttgagtagttcttgcttctcataatctggattagaacattactcaaatattcactattcactgtatacctgtaactctacctcttcattactttactttaactgatgctctcaaacactttattaagagacaagaaattcaagtaattaaaggataacttttttttgacttttgttgtagtaaaacatgataaagagtactaacctttgttgaataggcctcctctgctctcccacagctttctcaGACTGTACCATAGCCTAATCTCCGAGCTACACTATAGGTTGTaatcagtggtttttaatatgcttttttgtgcactttttaagtcattaatgcctagttttaaatgtcagtgctctccagattctaccaatgaggtgtggagctactttgagctctggaaaacagtgtaaaaagattATTTATCAGGGGCAAATTATGCCACAAAGCTCttgttgtaaagagtgctgggcaaaaagcacaacatttctggatctcagaaagctgcaggagagcagaggtgtgctattcaacaaagattAGTACTCTTcatcacattttacacagtaaagTTTTCctttaactgaaagcctgaattccaggtgactctacctcataaagctgactgagaaaatacagcctatatgtgcaaaactgtctctatctaagcaagagaagaatctaaattataataaaacatattctggttgtttttaacactttttggttACTAAATACAAACTCCCTTTGTTTTCTTCACAGTTttaatgactttagtatttatCTACAATGCAGGAAATCTAAGGTGTGCctgaacttttgactggtacagtaaGACAGATGCGACGGATACTGTACATTTGTGATGTCCAGATAGGCAAATCCAATCtgaatcctttttttttctccaaacaaTAGAGATGCCCACTAAAATTCAATAGCAATGATCCTGATTGGTTTGCAGATTAATGAAGAACTACTGTATGAAGTGACAGAAAGTAGACTGTTGAAGCAGCATTATTTCACAGGCAGGTAAACTGAAACAGTACAAACTGTAAGCATTACCACTTACCAAAGTGCCTCGAGACGTCCATCAGTCTCTCAGTGATAATCTGTACATTCCCTTACGCGTTACTGAAGGCCACTACTACTACAGACCTCCTCAGCGAAACTCTCAGACAGCTTTGGCTAAACAGGAGTGACCAGCAAGAACATTAAGTCTGATTATTTATGAACTAAAAGCTGGTTTATAAAGATCTGTGTGTCTCCCAACtttgagtgtgtttacatgcactgaaAATTCAGATTACTGCAGAAAAGTTTACTGTGGAGTTATTTTTAGCCAGTTTTAGATTTTTGCAATAAACTCATGCAAAAGCCTTAAAAAAAcgtaatttcctttttttttttttaacaaatcaaACAGCAATAGATGCACATATGATTATACATCAGCTAGAAGATAAAGGTTATTTAAAttcttcagttttagtgtagcTCTGAAAATGTTTGGCTCTATGTGCAGTTGTAAGgttttttcacaccagcactacttgtggtgagaatgtgatcagTCCTgctctacactgcaaaaatacagctatagaataaaataagagagcacgtaaaaatgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactaaaccaggagtaaaggcataaagttatccaacagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201737 lncRNA upstream 87893 2879989 ~ 2914529 (+) True G149008
TU201684 lncRNA upstream 498979 2499737 ~ 2503443 (+) True G148975
TU201664 lncRNA upstream 590345 2411703 ~ 2412077 (+) True G148959
TU201151 lncRNA upstream 593050 2403767 ~ 2409372 (+) False G148611
TU201750 lncRNA downstream 166 3006085 ~ 3009536 (+) True G149019
TU201755 lncRNA downstream 17891 3023810 ~ 3027200 (+) True G149024
TU201764 lncRNA downstream 23811 3029730 ~ 3033067 (+) True G149026
TU201765 lncRNA downstream 23811 3029730 ~ 3033067 (+) False G149026
TU201766 lncRNA downstream 24478 3030397 ~ 3032129 (+) True G149027
XM_022678683.1 mRNA upstream 34845 2937301 ~ 2967577 (+) True LOC103027018
XM_022678681.1 mRNA upstream 111111 2797862 ~ 2891311 (+) True LOC103030361
XM_022678682.1 mRNA upstream 111111 2797862 ~ 2891311 (+) False LOC103030361
XM_022678671.1 mRNA upstream 599068 2346290 ~ 2403354 (+) False tnk2
XM_022678685.1 mRNA downstream 22464 3028383 ~ 3139358 (+) True mib1
XM_022678688.1 mRNA downstream 22464 3028383 ~ 3139358 (+) False mib1
XM_022678689.1 mRNA downstream 22464 3028383 ~ 3139358 (+) False mib1
XM_022678687.1 mRNA downstream 22464 3028383 ~ 3139358 (+) False mib1
XM_022678686.1 mRNA downstream 22464 3028383 ~ 3139358 (+) False mib1
TU201123 other upstream 887957 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 1797022 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 998999 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1121030 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1153281 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 1286564 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 1306692 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile