RNA id: TU201964


Basic Information

Item Value
RNA id TU201964
length 1838
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G149175
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 3701156 ~ 3725867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcaaaccaaactgaactgcttgaagttttgcaccaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgctttTGTTTgccatttcattttaattttctgtaaataaatgctctaaatgacaatatttttgttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcatttttttcaaacataaacctaaaaatagcaaaatcaaagaaactgattcagaaactgaagtggtctcttcattttttccagagctgtcctgctgtgtgtgaacatagccttagtctatgtattaaaatgtacaatttgAACTCATTAGTGCTATTGATCGTACCCTTATGATTAAACATCACTAAAAATCCCATAACAGCACTATTAATAACGTTTAACAGTGCAAGAACCGCTCATTTCACAGAACTATATAACAGTGTCTATCTAGACTTTAACAAGCAGTAATGCCGGGGGGTCTTAACTGACCCATTTTATAGGCACAGGCTGATTTAAGAAGGCACAGGGTGGGCACACAACAGCTTTCGGCACTCCTGATTGGTGGAAAAAAACaactacacaaaaaataaaggtgctacagaTGGTTCTTTGAGGGATGCCGTAGAATACACCCACAGTTCTGTTATATTTAAGCCCATAAGCTCATTATCCCATGAATTTGAAGTGAAAGAACAACCGGAAGACAGTagaaacggcaggtttaagttcattttttatgCTTTACTCGCgcaaataaaaccaaataaaacttaaacattGCTTCAAAACCGGCTGTTTTTTAGCTGCAAGGTTtacgagctgtacaggactaggatagtaacgtTAGCCGAGctaatttagctttagcttgttctcaaaattacaaatttaaaaGCACTACATAAATACGTTCAACCTattcaatttattaaaaaaaattaaaagctgtaaaaaatgtgtttgattattagcatttagccaaatgtttcatttttacttcagttttttttgttcaaatatgTTCATTTCAGTGCATCTCTTCTAATTTAGCTTTTTTGGTTTCAAAGAACTGTAATTGTAGCATTTCCTGAATGCTACTATTACAGTTCTTTAAAAGTTGAATCTGTCGATTTTTATGGAAGTTCTTAGaacgtttttatttaatgtttttgcttttaACGTTTCCAcaaagctattattatttgtatagcTTGAAAcattatgtgagaaacattctaataacgtTGTGATGGAAATCCTCATTATTATGTCATAGCTGCTATTGCTTCAAAAGGTTtacgagctgtacaggactagaatAGTagtgttagctaagctaacttagccttagcaattgtttgttcttaaatgtttaaaagcacTAAATAAATACGTTCAacctatttaatttattgaatgacaaaaaaaattaaaaactgtaaaaaatgtgtttgattattagcatttagccaaatgtttgaTTTTTACTTCAGTGTCAGTTTTGGTCAAATATGTTCGTTTCAGTGCATCTCTTCTCATTTAGACCCATCTATAatttttttggttagtagaacattttctgaatgttcttCTATGGTATCCCTCAAAGAACCGTGTCTAGCACCTTTACTTTTAACAGTGTGTTCTGGATAGCTGAAGAGGCCGTGGTTAAGAGTACTGCTGAGTGAATCGCTGATGGAACTCCTTCAGTTTGTCGAGCATTATCTTTAGTTTATCTGTGGGTGGTAAGATGGTCATCCTgtgcagaaaaagagataaaaaagagaagagaaaaaagagaaaaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201940 lncRNA upstream 62202 3638075 ~ 3638954 (+) True G149159
TU201913 lncRNA upstream 237936 3421230 ~ 3463220 (+) True G149142
TU201899 lncRNA upstream 316323 3381943 ~ 3384833 (+) True G149130
TU201894 lncRNA upstream 333019 3366452 ~ 3368137 (+) True G149126
TU201869 lncRNA upstream 415934 3284724 ~ 3285222 (+) True G149109
TU201983 lncRNA downstream 11494 3737361 ~ 3739572 (+) True G149191
TU201988 lncRNA downstream 30299 3756166 ~ 3769759 (+) True G149195
XR_002651089.1 lncRNA downstream 154265 3880132 ~ 3881275 (+) True LOC111194476
TU202021 lncRNA downstream 254927 3980794 ~ 4091841 (+) True G149222
TU202026 lncRNA downstream 265943 3991810 ~ 4009692 (+) True G149226
XM_007243473.3 mRNA upstream 18635 3678996 ~ 3682521 (+) True pter
XM_007231100.3 mRNA upstream 68288 3585245 ~ 3632868 (+) False LOC103028887
XM_007231099.3 mRNA upstream 68288 3585246 ~ 3632868 (+) True LOC103028887
XM_022678690.1 mRNA upstream 341305 3295980 ~ 3359851 (+) True LOC103030995
XM_022678691.1 mRNA upstream 341305 3295985 ~ 3359851 (+) False LOC103030995
XM_022678702.1 mRNA downstream 227536 3953403 ~ 3998059 (+) True LOC103047776
XM_022678703.1 mRNA downstream 227536 3953403 ~ 3998059 (+) False LOC103047776
XM_022678711.1 mRNA downstream 395448 4121315 ~ 4123410 (+) True LOC103021386
XM_022678716.1 mRNA downstream 544150 4270017 ~ 4286199 (+) True LOC111194481
XM_022678720.1 mRNA downstream 566616 4292483 ~ 4377412 (+) True LOC111194484
TU201123 other upstream 1586691 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 2495756 1200285 ~ 1205400 (+) False G148442
TU202027 other downstream 279051 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 401082 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 433333 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 566616 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 586744 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile