RNA id: TU202835


Basic Information

Item Value
RNA id TU202835
length 782
RNA type TUCP
GC content 0.48
exon number 3
gene id G149754
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5725269 ~ 5727420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacacacacacacacacacacggaaaaTGGAAACGGCCGCTTCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACCCAGCGCTTCCAGCGGACACTCGCTATACTTGAACGGCAGCGAGGTGCAGTATCCACCGCACGTCAAATCAGCAAACGCCAGGAAAATATTCAAAACAAAAATCCTGTCTGACAACAGCTTACACAACTTTCAAAACTGCTTTCAAAATATGAAGAAATCTGCTGcatcaaaaagaaaaactacagATTCACAGAGAACACCAGTGAACAACACTGTACACAGATCTGTACACAGCCCTACAACACCACGAGCACAGCCGGAGCTCACACCTAAACTGGCCTGCAGCATCAGGACTCTGAGAGAAGGGCTATCTATATTGGAACAGGAGTTTACTCATTTTAAAGAGAGAATCCTGTCCTGCCCTCCTCaggaaaacaacaacagcagcaaacCAGCAGGAGAACTTTACACTGAAGTTCTACAACATAAGAATGAGATCCGGGAACTACATCAGGCCATGAGAGAACTGGAAGAGGATAATCAGAATCTGAGGACAGTTTTACGGAGAATAACAGAGGAACTAAACACAATCACTCAACAGCTCAGCACTCCAGCACAGATACCCCAACACAGCCAGACAAGCACCAGAGAAAACTGCACCAGGTCCACTAACATTACCTCTCCCACCTCCTCACCCCCACGCCCTACACTACCCTCTCCTCATACCATACCTCAACCTACCCCaccaatacaaacacacaca

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202678 lncRNA upstream 217216 5425892 ~ 5508053 (+) False G149652
TU202679 lncRNA upstream 217216 5507350 ~ 5508053 (+) True G149652
TU202670 lncRNA upstream 350009 5373009 ~ 5375260 (+) True G149644
TU202660 lncRNA upstream 379835 5344844 ~ 5345434 (+) True G149635
TU202632 lncRNA upstream 484256 5239777 ~ 5241013 (+) False LOC103023972
TU202843 lncRNA downstream 59505 5786925 ~ 5816467 (+) True G149757
TU202846 lncRNA downstream 222431 5949851 ~ 5950341 (+) True G149760
TU202856 lncRNA downstream 226985 5954405 ~ 5959940 (+) True G149766
TU202860 lncRNA downstream 238740 5966160 ~ 5966431 (+) True G149768
XR_002651101.1 lncRNA downstream 242213 5969633 ~ 5973852 (+) True LOC111194498
XM_007258384.3 mRNA upstream 381199 5333871 ~ 5344070 (+) True LOC103043150
XM_007258383.3 mRNA upstream 420350 5273915 ~ 5304919 (+) True mmp28
XM_022678757.1 mRNA upstream 452167 5262341 ~ 5273102 (+) False LOC111194496
XM_022678756.1 mRNA upstream 452167 5262341 ~ 5273102 (+) False LOC111194496
XM_022678755.1 mRNA upstream 452167 5262342 ~ 5273102 (+) True LOC111194496
XM_022678773.1 mRNA downstream 188179 5915599 ~ 5931912 (+) False mlf1
XM_007258388.3 mRNA downstream 188185 5915605 ~ 5932823 (+) True mlf1
XM_015608140.2 mRNA downstream 188185 5915605 ~ 5932823 (+) False mlf1
XM_007258389.3 mRNA downstream 188186 5915606 ~ 5932823 (+) False mlf1
XM_007258390.3 mRNA downstream 188186 5915606 ~ 5932823 (+) False mlf1
TU202617 other upstream 525284 5196170 ~ 5199985 (+) False LOC103032635
TU202598 other upstream 610553 5111685 ~ 5114716 (+) False LOC111194607
TU202584 other upstream 622911 5090982 ~ 5102358 (+) True G149595
trnal-uaa_58 other upstream 877533 4847655 ~ 4847736 (+) True trnal-uaa_58
trnal-uaa_57 other upstream 877723 4847465 ~ 4847546 (+) True trnal-uaa_57
trnat-agu_4 other downstream 819284 6546704 ~ 6546777 (+) True trnat-agu_4
trnat-agu_5 other downstream 819527 6546947 ~ 6547020 (+) True trnat-agu_5
trnat-agu_6 other downstream 819934 6547354 ~ 6547427 (+) True trnat-agu_6
trnat-agu_7 other downstream 820254 6547674 ~ 6547747 (+) True trnat-agu_7
trnat-agu_8 other downstream 821336 6548756 ~ 6548829 (+) True trnat-agu_8

Expression Profile