RNA id: TU203150


Basic Information

Item Value
RNA id TU203150
length 2506
lncRNA type read_through
GC content 0.40
exon number 6
gene id G149984
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6935341 ~ 6947936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCTAATTTGCCTCTACTGCCTCTGCAAGCGCAGGCAAGATGGCAGCTTCCATTTCGGCCATATTTTGGCTTTAAAACGCCTTAATGAGAGTAAATGGGGACCGTCCAGTCCATACTTTTATACAGTCTATAATCACAACCCAAACTCCACAACGCGCCAAGCAGCACATTTTTAGTTGCTGCGGAAGCACAGCTCATTtaggctcagctcagctcacctCAGGACTTGTTGTGCTACTAAGATATAAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatagTGTGTGGTGATGACTGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggagaAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTcaggtaaaacactgtaaacaggGACTGTACATTATCTGCCATGTAGGCAAAGTGTACAGCACAtatgattttcctttttaacCCACCCTAAATCTTTGTTGATTGCCAAGGTAAATTGGTATGTTTAAACTGAGCAATCACCAAACTGTGCTGTACACTGGAATTCTCAACCAACAAttaatttactgatttttttttttttactgatttcatAATTTTGCTGATccatattaatttgtttaatgtaattcatagCTTTACTGAACTTATTTTGAATCCTTATACTCTCTTTAGTTTTTTCCAATGCATTTATGAATCATTCATTGTGCAATATTTAGCATCATCATGCTTAATCATTTATCATTACTGATAAAtaagctttctttttttcatggtAATTTTTAGGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggTGAGAGCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgggagctgggctgtggttctcctgtggagattctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGTAAGAGCTGCATGTTTGTGATTAATGTCATTAAGATTAGCTCAATGTTTATGTAAACTTTTTGTAATTCTGTCAAAAATGCAAATGTCTTGCTATTATTTCAGTTTTCAGCCACAATTCTACTTTACATCATTTATAGTGgtgaaaatacatgtttttttccattctttctCAATGTCTTGGTCTGTCTTACTCACTGTTGTACAGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGTAAGAGCTGCATGTTTGTGATTAATGTCATTAAGATTAGCTCAATGTTTATGTAAACTTTTTGTAATTCTGTCAAAAATGCAAATGTCTTGCTATTATTTCAGTTTTCAGCCACAATTCTACTTTACATCATTTATAGTGgtgaaaatacatgtttttttccattctttctCAATGTCTTGGTCTGTCTTACTCACTGTTGTACAGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaaCCTCTAAATTTTCTCTTCAGTGCTGAAAGTGAGACTtagttaaactgttaaaataagaCTTGTTAAACCAATCTAAagttgttgccatgtgggtcagccagacctcttcctgtaccttttttttcttgtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203106 lncRNA upstream 41690 6893316 ~ 6893651 (+) True G149960
TU203089 lncRNA upstream 107569 6769964 ~ 6827772 (+) True G149944
TU203097 lncRNA upstream 128299 6804479 ~ 6807042 (+) True G149952
TU203077 lncRNA upstream 172235 6753018 ~ 6763106 (+) True G149938
TU203072 lncRNA upstream 190316 6741526 ~ 6745025 (+) True G149934
TU203172 lncRNA downstream 306483 7249165 ~ 7251366 (+) True LOC111194506
TU203177 lncRNA downstream 310344 7253026 ~ 7254591 (+) True LOC111194505
XR_002651108.1 lncRNA downstream 310345 7253027 ~ 7254335 (+) False LOC111194505
TU203182 lncRNA downstream 330523 7273205 ~ 7284336 (+) True G150002
TU203196 lncRNA downstream 431331 7374013 ~ 7383978 (+) True G150015
XM_007258400.3 mRNA upstream 29700 6894328 ~ 6905641 (+) True nmd3
XM_015608157.2 mRNA upstream 29700 6894439 ~ 6905641 (+) False nmd3
XM_022678787.1 mRNA upstream 209996 6702236 ~ 6725345 (+) False smc4
XM_007258396.3 mRNA upstream 210193 6699726 ~ 6725148 (+) True smc4
XM_022678786.1 mRNA upstream 348972 6583046 ~ 6586369 (+) True c17h3orf80
XM_022678795.1 mRNA downstream 1807 6944489 ~ 6946968 (+) True LOC111194504
XM_022678801.1 mRNA downstream 574322 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA downstream 574325 7517007 ~ 7540136 (+) True LOC103022780
XM_022678803.1 mRNA downstream 583344 7526026 ~ 7540136 (+) False LOC103022780
XM_007230642.3 mRNA downstream 586858 7529540 ~ 7540136 (+) False LOC103022780
trnat-agu_11 other upstream 197307 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 200173 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 386116 6549152 ~ 6549225 (+) True trnat-agu_9
trnat-agu_8 other upstream 386512 6548756 ~ 6548829 (+) True trnat-agu_8
trnat-agu_7 other upstream 387594 6547674 ~ 6547747 (+) True trnat-agu_7
TU203154 other downstream 983 6943665 ~ 6947936 (+) False G149984
XR_002651109.1 other downstream 306767 7249449 ~ 7251366 (+) False LOC111194506
TU203302 other downstream 827002 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 931958 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1706148 8648830 ~ 8656708 (+) True G150321

Expression Profile