RNA id: TU203154


Basic Information

Item Value
RNA id TU203154
length 1451
RNA type TUCP
GC content 0.38
exon number 6
gene id G149984
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6935341 ~ 6947936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaagttttttttaataatcagaaaaatatcagtatatctgtagggggcaaatacttctTCATGGCAATGTATGTGTGCAGGATTGCTTGAGATTTTTTGGGACTACAAGCTACACCTTGCTGTGCTTTTTACACTCATCTGGTCATGCTgggaacacattttaataaaaagtgtaaagtgtatcagaaaaaattacatttgtgagtgaaataataagatattttacattgaattacattacatttggcagatgcttttgtccaaagtgacttacaataatggTGTACATTTACTAataggagcctgttctgtccgAAAATCGCACTGAAAAATTGTTTTTGTCATTGCTGGAATAGTTCGGTGGGGTTAGAGaaaaagagcagtctggtgcAGCTTGAAGTTTCCTGTGCGCCCTGTTAGAATGCCTGGTGTTATTTGAAAATCACAACCAGACTGACTTTTAATTCTGTGCGTTGGTGTGAAATGAGGGGGTTTGCCGCTCAATTGAAACTCTCAATTGTTATTGCTGAGATCATTATTTTAGTAATGAGTTTAGTAGTATTGATTTGATTTTTGTAGTATTTATAGCATGTGTCTCCATTTCTAGGAGAGAAGAAACAGCTTGCATTTGAAAACCTTCAAAAATTCTTCTTATTTCCAAACCAGGGTCAGTGCTCAAGTACGAATATTTGACTACCACTCCATTCACTACTTGAATTACATGCCTATTAGGttgagaggaggagaggaaatcTGTTCTGGGAGGTTGGAGGTGTATCATAATGCTGAGTGGGGGTCTATATGTGCTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGTTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGGCTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATATTTGTCACATTACCTTTTTCATCTGAAACAACTACAACTTACACCACAGtaccagcacagctaacagagaaaaagacagtCCCTCCTTCAAAAAATCCATCATCTAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGGAAGTTTTATCTCTGAAGATCAGCATTCAGGATATGAGGACGTAGATGAGGAGCTTCTCTCAGGTAAGTTGACATATACTGAATGTGTGTTAGAATTTTTAATgcagaagaaaaaacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203150 lncRNA upstream 983 6935341 ~ 6942682 (+) True G149984
TU203157 lncRNA upstream 983 6935341 ~ 6942682 (+) False G149984
TU203106 lncRNA upstream 50014 6893316 ~ 6893651 (+) True G149960
TU203089 lncRNA upstream 115893 6769964 ~ 6827772 (+) True G149944
TU203097 lncRNA upstream 136623 6804479 ~ 6807042 (+) True G149952
TU203172 lncRNA downstream 301229 7249165 ~ 7251366 (+) True LOC111194506
TU203177 lncRNA downstream 305090 7253026 ~ 7254591 (+) True LOC111194505
XR_002651108.1 lncRNA downstream 305091 7253027 ~ 7254335 (+) False LOC111194505
TU203182 lncRNA downstream 325269 7273205 ~ 7284336 (+) True G150002
TU203196 lncRNA downstream 426077 7374013 ~ 7383978 (+) True G150015
XM_022678794.1 mRNA upstream 2468 6939059 ~ 6941197 (+) True LOC111194503
XM_022678793.1 mRNA upstream 4682 6935130 ~ 6938983 (+) True LOC111194502
XM_007258400.3 mRNA upstream 38024 6894328 ~ 6905641 (+) True nmd3
XM_015608157.2 mRNA upstream 38024 6894439 ~ 6905641 (+) False nmd3
XM_022678787.1 mRNA upstream 218320 6702236 ~ 6725345 (+) False smc4
XM_022678801.1 mRNA downstream 569068 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA downstream 569071 7517007 ~ 7540136 (+) True LOC103022780
XM_022678803.1 mRNA downstream 578090 7526026 ~ 7540136 (+) False LOC103022780
XM_007230642.3 mRNA downstream 581604 7529540 ~ 7540136 (+) False LOC103022780
XM_022678805.1 mRNA downstream 658553 7606489 ~ 7611611 (+) True srprb
trnat-agu_11 other upstream 205631 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 208497 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 394440 6549152 ~ 6549225 (+) True trnat-agu_9
trnat-agu_8 other upstream 394836 6548756 ~ 6548829 (+) True trnat-agu_8
trnat-agu_7 other upstream 395918 6547674 ~ 6547747 (+) True trnat-agu_7
XR_002651109.1 other downstream 301513 7249449 ~ 7251366 (+) False LOC111194506
TU203302 other downstream 821748 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 926704 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1700894 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 2607723 9555659 ~ 9567097 (+) True G150579

Expression Profile