RNA id: XR_002651108.1


Basic Information

Item Value
RNA id XR_002651108.1
length 449
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC111194505
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7253026 ~ 7254591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACTCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAGTCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203172 lncRNA upstream 1661 7249165 ~ 7251366 (+) True LOC111194506
TU203150 lncRNA upstream 310345 6935341 ~ 6942682 (+) True G149984
TU203157 lncRNA upstream 310345 6935341 ~ 6942682 (+) False G149984
TU203106 lncRNA upstream 359376 6893316 ~ 6893651 (+) True G149960
TU203097 lncRNA upstream 445985 6804479 ~ 6807042 (+) True G149952
TU203182 lncRNA downstream 18870 7273205 ~ 7284336 (+) True G150002
TU203196 lncRNA downstream 119678 7374013 ~ 7383978 (+) True G150015
TU203253 lncRNA downstream 393288 7647623 ~ 7647886 (+) True G150060
TU203259 lncRNA downstream 400093 7654428 ~ 7659678 (+) True G150065
TU203263 lncRNA downstream 425333 7679668 ~ 7740088 (+) True G150069
XM_022678795.1 mRNA upstream 306059 6944489 ~ 6946968 (+) True LOC111194504
XM_022678794.1 mRNA upstream 311830 6939059 ~ 6941197 (+) True LOC111194503
XM_022678793.1 mRNA upstream 314044 6935130 ~ 6938983 (+) True LOC111194502
XM_007258400.3 mRNA upstream 347386 6894328 ~ 6905641 (+) True nmd3
XM_022678801.1 mRNA downstream 262669 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA downstream 262672 7517007 ~ 7540136 (+) True LOC103022780
XM_022678803.1 mRNA downstream 271691 7526026 ~ 7540136 (+) False LOC103022780
XM_007230642.3 mRNA downstream 275205 7529540 ~ 7540136 (+) False LOC103022780
XM_022678805.1 mRNA downstream 352154 7606489 ~ 7611611 (+) True srprb
XR_002651109.1 other upstream 1661 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 305091 6943665 ~ 6947936 (+) False G149984
trnat-agu_11 other upstream 514993 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 517859 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 703802 6549152 ~ 6549225 (+) True trnat-agu_9
TU203302 other downstream 515349 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 620305 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1394495 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 2301324 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 2596883 9851218 ~ 9852854 (+) True G150674

Expression Profile