RNA id: TU203253


Basic Information

Item Value
RNA id TU203253
length 264
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G150060
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7647623 ~ 7647886 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caatagtgcaatattgatggtgattgagatggaatgacagtaaaaatagtaaataacagtagtgcaaatacggtatatggtatatagcttaaggctggtaaagtgaatgggtgcgtaagtccttaaagttcacagtttaattaagtggaattaaagtgcgtattgacagtgcaagtatatcagtagtgcaggtgttgtgtagtgcaagtccgtttggaagggaccagtactttgtgcattgtagtgcagagtttcagtacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203196 lncRNA upstream 263645 7374013 ~ 7383978 (+) True G150015
TU203182 lncRNA upstream 363287 7273205 ~ 7284336 (+) True G150002
TU203177 lncRNA upstream 393032 7253026 ~ 7254591 (+) True LOC111194505
XR_002651108.1 lncRNA upstream 393288 7253027 ~ 7254335 (+) False LOC111194505
TU203172 lncRNA upstream 396257 7249165 ~ 7251366 (+) True LOC111194506
TU203259 lncRNA downstream 6542 7654428 ~ 7659678 (+) True G150065
TU203263 lncRNA downstream 31782 7679668 ~ 7740088 (+) True G150069
TU203307 lncRNA downstream 158980 7806866 ~ 7807171 (+) True G150104
XR_002651110.1 lncRNA downstream 218224 7866110 ~ 7873133 (+) True LOC111194509
TU203342 lncRNA downstream 228309 7876195 ~ 7877950 (+) True G150132
XM_022678808.1 mRNA upstream 20083 7620597 ~ 7627540 (+) True neu4
XM_022678805.1 mRNA upstream 36012 7606489 ~ 7611611 (+) True srprb
XM_022678801.1 mRNA upstream 107487 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA upstream 107487 7517007 ~ 7540136 (+) True LOC103022780
XM_022678803.1 mRNA upstream 107487 7526026 ~ 7540136 (+) False LOC103022780
XM_007230633.3 mRNA downstream 174095 7821981 ~ 7837425 (+) True LOC103046888
XM_022678813.1 mRNA downstream 174324 7822210 ~ 7837425 (+) False LOC103046888
XM_022678815.1 mRNA downstream 343608 7991494 ~ 8017086 (+) True ap1m1
XM_022678816.1 mRNA downstream 345617 7993503 ~ 8017086 (+) False ap1m1
XM_007239950.3 mRNA downstream 528223 8176109 ~ 8179619 (+) True LOC103039989
XR_002651109.1 other upstream 396257 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 699687 6943665 ~ 6947936 (+) False G149984
trnat-agu_11 other upstream 909589 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 912455 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 1098398 6549152 ~ 6549225 (+) True trnat-agu_9
TU203302 other downstream 121798 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 226754 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1000944 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 1907773 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 2203332 9851218 ~ 9852854 (+) True G150674

Expression Profile