RNA id: TU203469


Basic Information

Item Value
RNA id TU203469
length 2412
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G150245
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8188267 ~ 8190741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCAAATACAATTCACCAATACATTATTTGTAATGCGGAAATATGGGAAATTCTACACCTTCACAAAAGTATAAATAAGCATTTGTCTGCAATATAGATATATTCTGCGAGTAGCAGGAAGTAGTGTTGTACATAAGGAGtgcaataaataaagtaaaacataaaaatgtaacaacatatacagtataaggcCACAAAAGTACATcctaaaaccaaataaaacaaaaacataaaatcaaccATCTGTACTTTTTCAAGTTCAATCATTTTGCAGTTCATTTCAtttaacacagtgttttacCGTTAGCGAAAAGCTCAggttccaaaaaaaaagcaaaaacaatcaCATAAATGCATTGTATTTGGGAATGCGTACAAATATTAACTTGGGTATTGTTCAATTATTCTCCAAACTTCAACTCTTAACACTACTCTGAGAGATTACAGTAGAAGCACTGGGATTTTTAAAGGAAATCATTTTTATCCAAGAAAGCAACCTGAATATGCTACAAATCAGATCATGCTAACTTACCACAGAAGCCTTCATTTACCATCATTCATTtacaaatcatacatttacactaAAAAGCACAGTTATTGGTTTATTAGGATATGAtgcaccaatcagccataatatTAACACCATATTCTTGTTTCTATAtagaagcactttgtagttctataattaaagactgtagttctgtatctgctTCCCTTTCAAGCTGTTCTTTTATGGTCAGGACCACCCatgatagaccaccacagagcagctattattctttgggtggtgggtcactGATTCTCAGCTCTGAAGTGACTgtactgacatggtggtggtgtatgaggtgttagtagtgtgtgttgtgttgatacagtgagtggatcaggtacagcagtgctgctggagtttttaaacactgttctaTGGCTGTACGATATATGGTTTAAGCATTGTGATCGagacgtgtgatgtcacttaaaaAGGCAATTAAACTaaacacatcatgttgcaatgttttgattcttgacataAGAAGTACAGTAGAcacacagcactgtctctgtgtctgtgtgagggacaggctgctgctgcctgagaagcgcgaggttggcttgtaaacgcacgtgtcaaaagctgtgcacctcagtccagcacagttttgcagcgatgatatttccagttacagctgaattcacacttttaataagaataaataaatctctattaaccttttaaagagtgCTTGGCGCTAaatcagctcttgattggtctggACGCGAGACAGCGCCTggttgggggcggggctggtgacatcatgggccctgcattgtttaatatcgcaatataaaTCGCAGAGCATTTCAATGTAAAATTTTGATGGCACTAGTGGATGCCACTCAAAGGACTATTCCCAGTTCAGCAGTGACATTAAGACATTGAatctaaggtgtttaaaaactccagcagcactgctgtgtctcatCCACTCAtaaaaccagcacaacacacactattaaCACCCAGCGCATAATCtagtgcagtcactgcagtgctgagaatcaaTGACCCACCATCCAAACTATAGCGTTTCTTcagtggtcctgtggggtcccgAACACTGAATAACTAAAGGGTGAAAAGAAGTTAACAGAgaaagcagagaaacagataaaggACTACAAATGGCtgatctgtatatatatatgttactgcatattaacagtCTCCCTGCACACTGTAGCACACTTACTTTAATTCCTTGCATTATAAGTCCTAATAAAGTCCTTCACTTCGGAGTCGGGTCCACCTGAGCTGGGAAAACACAAACATGCGAGTGCATGGGCTccctatacatttttatatcataaagatttatttattttgctctaaataataataacatgcaTTTATGTTGCGCTGTAACTTCTTCATATGTACAGCTTTGGATTAGgcagtgattaaaaaaagaaaatgctgcATGCAAATAAGCTGCTATTGCGTTCgttaaaacaaaaagttatttaatataAGAGGTTACTGAGGTTTAAAAATGAGCATTTGGGTTTAGCATCGGGGTTGGGAGCACTATGGTTACCGGTATTTGGTATCTAACAGACAAACCCGTGAGGATGTAATCAATGGCTGTGACTGAAATGGATCCTTTTTTTCAGGAGTTTATGATATGGGCAAAAACTTAAGATTTGTAATCACAATGTTGGAAGTAGTAATTTGCTGTGTGAATTCACTGTggatctctcactctctctgctttactctgcctcgctctacatCCAGCCTCAGTATGTCACACAATCCCATTTTGCAGCATCAacagctccctctgttgctcgTCAAGGGTAATGCAGTTTGAGCTTGATGTTATTCACAATGTTATCACAGCTTGTTaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203463 lncRNA upstream 32422 8155636 ~ 8155845 (+) True G150239
TU203459 lncRNA upstream 59507 8128466 ~ 8128760 (+) True G150235
TU203412 lncRNA upstream 206867 7981094 ~ 7981400 (+) True G150196
TU203419 lncRNA upstream 219203 7968777 ~ 7969064 (+) True G150203
TU203342 lncRNA upstream 310317 7876195 ~ 7877950 (+) True G150132
TU203484 lncRNA downstream 16727 8207468 ~ 8261000 (+) True G150254
TU203473 lncRNA downstream 67171 8257912 ~ 8309434 (+) True G150248
XR_002651111.1 lncRNA downstream 80572 8271313 ~ 8275506 (+) True LOC111194510
TU203490 lncRNA downstream 85564 8276305 ~ 8279882 (+) True G150260
TU203501 lncRNA downstream 122286 8313027 ~ 8324648 (+) True G150269
XM_007239950.3 mRNA upstream 8648 8176109 ~ 8179619 (+) True LOC103039989
XM_022678815.1 mRNA upstream 171181 7991494 ~ 8017086 (+) True ap1m1
XM_022678816.1 mRNA upstream 171181 7993503 ~ 8017086 (+) False ap1m1
XM_007230633.3 mRNA upstream 350842 7821981 ~ 7837425 (+) True LOC103046888
XM_022678813.1 mRNA upstream 350842 7822210 ~ 7837425 (+) False LOC103046888
XM_022678577.1 mRNA downstream 107503 8298244 ~ 8299583 (+) True LOC111194453
XM_022678824.1 mRNA downstream 138557 8329298 ~ 8357694 (+) True LOC111194511
XM_022678825.1 mRNA downstream 178628 8369369 ~ 8373186 (+) True LOC103029326
XM_007235960.2 mRNA downstream 178628 8369369 ~ 8373186 (+) False LOC103029326
XM_007235968.3 mRNA downstream 195561 8386302 ~ 8394623 (+) True LOC103032299
TU203337 other upstream 308966 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 383013 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 936901 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 1240331 6943665 ~ 6947936 (+) False G149984
trnat-agu_11 other upstream 1450233 6737961 ~ 6738034 (+) True trnat-agu_11
TU203562 other downstream 458089 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 1364918 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 1660477 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 1951383 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 1951383 10142124 ~ 10151874 (+) False LOC103031168

Expression Profile