RNA id: TU203872


Basic Information

Item Value
RNA id TU203872
length 1108
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G150555
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9368766 ~ 9381799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAACAATTTCTGCAACATGCTCCGAGCTAGGCACTGGCACACATTCGGTCATGTTCACGCTCCTCTTCCGGTTGCACAGCACCGAACCTTGCTCCCCCAGCACCACATGGGAGTGGGGCCCCCCAATGTGGTAACCGCCCGGGCCATAGTACTCTGGAGATGGGGAGCACGAGGTGGGAGACTCCCGAGATCCACCCGGGTGATCAAGCATCTGTAGGTCGACATAGCCTCCACTGCTTCCTCCTCCTACACTGCCACCGTTGCAGTTCTCAGACACAACGGTGCTTGTGGTCCCATCCAGAGGATCCACTTTATCCAGCCCCATGAGTGTCAGCTGGTCTAGGGCGAAGCGGAGCACCTCCTGATGGTCCTCGTCCCGGGACTCTGGGTCTGTTTCCCTGGCTAGAGCAACCCCGTTCTGCTGGCTGCTCACTACCATGTCGTGATCCATAATCTCTGGGTGGAATAGAGGGCTAGGCATAGTCACTTTATTCCCTTTAGTCCCCGTCGATGAGCATCAGACTCCGGGGCGGGAACAGGTTTTGGGGTGGGAACGGCTCCCTCTGGACAACCTTCCCAactagccacacacacacacttctccttcttcttcttttcctttcactccaaaaggaaaaggaatacaatagtaataaaatcagaaaataaaaccGCCTCTTTTAGCTAAACTATCTTAACGTGGTGTCCTGCCAATTGTGTTGCAGCATGGACTGAGcttttttgtattgtatacGGGGTGCTCAGCTCGCAGATACCGGGTGTCGTCCGCCGCCAGCTCGtggagggaggaagagaaaaaacaataaatatattaataataaaaaataaactatttcttcttcactctgcctccagcccgAGCAGTGCTCTCAATCCGCCGCCCGCGTGCAGGCACGGCCACTCCACGACAACAAAAACACGCACGCTCGCGCTCTGCTCGCTGTCTCTGCTTGCCTCGCGCTCCCGTTCCTCCGCTCCGCCGTCTTTGTCTCGCCACGCGCACGCCCGCCCGCTTGCTCGCTCGCTCGCCGCTCTGCCCGCCcgtctctcgctctcgctcgcTCGCGCACACGGGCTGACGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203864 lncRNA upstream 2924 9368766 ~ 9375245 (+) True G150555
TU203853 lncRNA upstream 116814 9255304 ~ 9261355 (+) True G150549
TU203848 lncRNA upstream 144802 9232901 ~ 9233367 (+) True G150545
TU203844 lncRNA upstream 145626 9229937 ~ 9232543 (+) False G150544
TU203841 lncRNA upstream 145773 9229937 ~ 9232396 (+) True G150544
TU203882 lncRNA downstream 4993 9386792 ~ 9394060 (+) True G150559
TU203881 lncRNA downstream 13604 9395403 ~ 9399422 (+) True G150558
TU203887 lncRNA downstream 20254 9402053 ~ 9406466 (+) True G150562
TU203890 lncRNA downstream 33753 9415552 ~ 9434530 (+) True G150565
TU203895 lncRNA downstream 70122 9451921 ~ 9452127 (+) True G150568
XM_022678858.1 mRNA upstream 18212 9278465 ~ 9359957 (+) True LOC103031140
XM_022678857.1 mRNA upstream 124052 9234681 ~ 9254117 (+) True eef2
XM_022678849.1 mRNA upstream 499365 8865571 ~ 8878804 (+) True LOC103025531
XM_022678846.1 mRNA upstream 594971 8777660 ~ 8783198 (+) True polr2e
XM_022678841.1 mRNA upstream 697309 8667922 ~ 8680860 (+) True LOC111194513
XM_022678866.1 mRNA downstream 143534 9525333 ~ 9584009 (+) True LOC103028184
XM_022678868.1 mRNA downstream 427527 9809326 ~ 9819170 (+) True LOC111194519
XM_022678871.1 mRNA downstream 448304 9830103 ~ 9837255 (+) True plekhj1
XM_007241591.3 mRNA downstream 492167 9873966 ~ 9882127 (+) True LOC103025670
XM_022678876.1 mRNA downstream 517529 9899328 ~ 9926814 (+) True LOC111194523
TU203562 other upstream 721461 8648830 ~ 8656708 (+) True G150321
TU203337 other upstream 1498868 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 1572915 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 2126803 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 2430233 6943665 ~ 6947936 (+) False G149984
TU203913 other downstream 173860 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 469419 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 760325 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 760325 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other downstream 760325 10142124 ~ 10150129 (+) False LOC103031168

Expression Profile