RNA id: TU203902


Basic Information

Item Value
RNA id TU203902
length 1651
lncRNA type inter_gene
GC content 0.48
exon number 11
gene id G150572
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9481817 ~ 9490264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaaaaaataaacctttattCTTCTTGCTGTAAGCAGCAAACAGTTTGTGTACATAGAAAGAGGTACAAACAACATTCAGGACAATATTTGtttagatatatataaatataaaaaataatactttgaaacactaaaaaataaaaaagagtattCATCATCAGCAAATGGTCTTTAAAGTCTTCTTTCACAGAGCATCACCACTTATCATCGATACAGTCGTCATCATCGGTCGAGCACTGTGTTAGATCCACAACGTCGTCTAGCAGTACAGGCTCACTTTtgagGCTGAGTGAAGAGTGGTCTGGGGTTTTGTTGCTCTCGCACTCTTCTCTCACTGGTCTCCAGGAGCCATTAGACAGGTACTCAATCACCTCCACATCTTCTTCTGTGCTCTGGAGGATGTTACTCAGCAAATATCGATCTGGAGTGTTTCAAAGAGAGCAGGCTTATGGCAGACAGGACAGGTCCACCTAGGCTTTCTCTCGTTCATCTGCAGGTAGAAGGCTGCGTCAAAGCACTGCAGGTGGGCACACGGCTGCGCTCGACAGGGGGCTGACATTCGGGTTTTCGCCAGAGGACAGATCAGGGACACTTGCAGCCCTGTGGTGGCGATCTCATTCTCAGCATCGCAACACAGCTTCTCACAAATTCTCTGTCTGCAGTGCTCCTCACTTTCCACAGCTTTGTTCTGAAGATGCTCAAAAAGATCTGTTGAGGTGAAAGCCCTCACCAGATATACAGCTACAGAATAGTGCTTGCCATAATTACCCCACATTACAGTAACACGGTTCACAGCGGTCTGTCTTAATAATGGGGTGAGATTGATTGGGCAGCAGGGGCGAGAAGGCTCCAAGCCTTCCTTACTGGATGCATAGCGGATCTGTAGGTCGCATTCTATGCCGTTGACCAACACAGAAATCTTGGGTGGATATTGATCGTCTTCAACGCCAACACTCTCTGTGTAGCACATTCTGAGCACCACTTGAAAGGACTTCAGCTTGGAATTGGACCCTTGAGAGCTCCTGATCTGAGTCCACTGGTTTGGAGTCAGGCACACTGTGATGGAATCTGTCTGCAGTTTAAGAGCAGAAACAGGCACTAATGGCACTAGAGGAACAATGGTCTCTAGTGTCTGATAGAAGGGAAGCTTGATCATCTGCGGCTCAGAGACGAGGCTGGGGGTCACTACGTCTGGTTTGCTGAGGCACTCAGCTGTGGGCATGGCTATAACCTCAGGAGAAGGCGGGATGGAGATGACCTGCGAGCGCCTGTTTTTGCCGGTAGTGGACTGGCGGAGTTTGTAGAGCTCCTGGATGGTGGAGAGCAGATCTGGTCTTTTCTCTTTCTGGAGGAGCCCAGTTACTCTTTGGACCAGCTCTTTCTTCAGGCCCTTCTTGCTCTTGCCAATAGAGGAGAGGAACTCGCGCAGCTCAGCCACTCGCAGGCTCTTCACCATATTCGTGGCTTCCAGCAGTTCAGCAGACATTCCCATGGGTTAATCTCAGCGGGTCTAAACTactgaaatatataaatcagGCAGGTAACGCTGGATTAGCTAATCCGCTGCTGACAGCCTTCAAAACTCCCGGTTAAACCGCAGCCGAAATCGCACGCCGAAAAGAGGGCGTGACCCGGGTCACGTGATCAGA

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203901 lncRNA upstream 3354 9474337 ~ 9478463 (+) True G150571
TU203895 lncRNA upstream 29690 9451921 ~ 9452127 (+) True G150568
TU203890 lncRNA upstream 47287 9415552 ~ 9434530 (+) True G150565
TU203887 lncRNA upstream 75351 9402053 ~ 9406466 (+) True G150562
TU203881 lncRNA upstream 82395 9395403 ~ 9399422 (+) True G150558
XR_002651119.1 lncRNA downstream 19590 9509854 ~ 9512555 (+) True LOC111194518
TU203914 lncRNA downstream 109196 9599460 ~ 9600049 (+) True G150580
TU203921 lncRNA downstream 168796 9659060 ~ 9667287 (+) True G150586
TU204017 lncRNA downstream 274807 9765071 ~ 9765448 (+) True G150663
TU204028 lncRNA downstream 297204 9787468 ~ 9790595 (+) True G150669
XM_022678858.1 mRNA upstream 121860 9278465 ~ 9359957 (+) True LOC103031140
XM_022678857.1 mRNA upstream 227700 9234681 ~ 9254117 (+) True eef2
XM_022678849.1 mRNA upstream 603013 8865571 ~ 8878804 (+) True LOC103025531
XM_022678846.1 mRNA upstream 698619 8777660 ~ 8783198 (+) True polr2e
XM_022678841.1 mRNA upstream 800957 8667922 ~ 8680860 (+) True LOC111194513
XM_022678866.1 mRNA downstream 35069 9525333 ~ 9584009 (+) True LOC103028184
XM_022678868.1 mRNA downstream 319062 9809326 ~ 9819170 (+) True LOC111194519
XM_022678871.1 mRNA downstream 339839 9830103 ~ 9837255 (+) True plekhj1
XM_007241591.3 mRNA downstream 383702 9873966 ~ 9882127 (+) True LOC103025670
XM_022678876.1 mRNA downstream 409064 9899328 ~ 9926814 (+) True LOC111194523
TU203562 other upstream 825109 8648830 ~ 8656708 (+) True G150321
TU203337 other upstream 1602516 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 1676563 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 2230451 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 2533881 6943665 ~ 6947936 (+) False G149984
TU203913 other downstream 65395 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 360954 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 651860 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 651860 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other downstream 651860 10142124 ~ 10150129 (+) False LOC103031168

Expression Profile