RNA id: TU204161


Basic Information

Item Value
RNA id TU204161
length 2126
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC103040721
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10320269 ~ 10363375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggaaaaatttgattttagtgATTTAGAAAATGGCATAATTGTTGGTGTCAGAAGGGGCTGGTAGAGTTGACTCAAAAAAGCCTAGTTAAATGCCATAAACAGACTTCTTAAGTGTCTTGGAAGTTGTGTTAGTCATATCAATATATCAGTAACGCATATTAATAACTTCTCTCTGATACCTGCAAGTCAAATAAAATCTCTCAGAATCCCGGAAACGTGAACGTAGGCCATAGACTTCTTTTTTCCCAATCGTGTATGTGAAAAaagcagagaggaagagaaaggcgCTACCCTCAGGTGTATATTCATGAagtgcatgcaaaacagagagaatTCTGATTGGCCtattctctgcaaagagtctctgagtcagccaatcagtatTTAGTGTTGGTAGGCAGTGGCAGTTTTCCCTCCTGGATTGGatgcattcaggagcatcatggctcccattaaaacttgggatgtctgcataTATACCGAACATGTAAAATCGTTTAACTTTCctaaaaaatcaacagtgcgccttattataatccagtgcaacttatgtataaattctagcAGTCAGGtattataaggagcagtaaagccactccactgaagtacagcgtgacaagggtttttttttataagagttttcagtgaagtttctccagaactaaggcttggtgcagcagcattagcattagccgctaatggcAGTGCTTGAGGGACGTAAATGCCGCCCtatagcgctagactgaggaaccctgagtgtttaggagagaaatctgtgtagattaacagtCAGCGCTTGTTTAacttggaaatatatatatatatatatatattacatggcggcacccttgctcacttcaattTAGGCATCCTTACAAGTGTTGCTAAATGCGCTTTATAAACAGTATGTacgaaaatagaccagaaaatagacgtttattaataGAATATTAtcctaaaaatacatttgataaGAGGGGTACCTCACTGCTTATACAGGTGCCTGAAAGAAACACTgctttcccatgacttttggcacatccgTACATAGTCTGAATAGTCCTCATAAAGTGCTTGGTTGGTGTATTCTGACAGTATGAAGTATAAAGAACACAACATCAGTATTCTTACACTGAGATTCGTTATCATCTGAGCCATATTAGAGCTGTAGCACTGTTTTGTTACGTATTATTatgaatgttattattattatgatgtaTTACTATAAAGTAGGGCTGCACACTATTATAAACTTGCATTTcctgtgatgtgtgtgtattgcaCATGCCCGCATTGTGTGATAACGACGCTGAAACAATACATTGTACAGCACTAATATGAAAAGTTCATGCTTCTTAGATGTCcatgcatgtttaaaataattacattcaaGTGCCTAAACTTCTACCAGCCTTTTTTAAAGCAAGtatttaatgattaaatatgtaatagtTCATATATAAGTTccagattaaatatatacaatatttatagtGTAACACAGgaatattatacagctctggacaaaaattaagagaccacttcagtttcttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaagctttcagacctcaaataatgcaaagaaaacaagttcaaaagtttataaattaatatttggtggaataaccctggttttaatcacagttttcatgcatcttggcatcatattctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagagattttcaatttgataaaatcaaagaattttttacagagctgatCAAAGCTGTCGCACAAAAATTGGGCAAATCAATGtgtaactttcagtggaagtcaatgtaaaaccaTTGTATCCTAAACGCtcaattttgaagcatttctattggtcaattcgTCTTGAAATTTggaaacaacataaaaaattcaaatttaaatgtttaaaaaaaatcaaaaagtgaaaaatgccTGAAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204168 lncRNA upstream 23341 10301373 ~ 10307405 (+) True G150757
TU204163 lncRNA upstream 49531 10280470 ~ 10281215 (+) True G150752
TU204152 lncRNA upstream 50916 10191520 ~ 10279830 (+) False LOC103021810
TU204118 lncRNA upstream 152269 10168326 ~ 10178477 (+) True G150735
TU204114 lncRNA upstream 210977 10119321 ~ 10119769 (+) True G150733
TU204192 lncRNA downstream 51538 10414913 ~ 10434013 (+) False LOC111194616
TU204400 lncRNA downstream 148713 10512088 ~ 10515654 (+) False G150883
TU204407 lncRNA downstream 148713 10512088 ~ 10518923 (+) True G150883
TU204410 lncRNA downstream 151173 10514548 ~ 10518383 (+) False G150883
TU204412 lncRNA downstream 151173 10514548 ~ 10518923 (+) False G150883
XM_007241656.2 mRNA upstream 122900 10193960 ~ 10207846 (+) True LOC103021810
XM_022678883.1 mRNA upstream 179235 10142124 ~ 10151511 (+) False LOC103031168
XM_007242241.3 mRNA downstream 19505 10382880 ~ 10386158 (+) True LOC103040403
XM_022678901.1 mRNA downstream 27104 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA downstream 27104 10390479 ~ 10407671 (+) False LOC111194532
XM_022679379.1 mRNA downstream 46584 10409959 ~ 10436494 (+) True LOC111194616
XM_022679380.1 mRNA downstream 77348 10440723 ~ 10452490 (+) True LOC111194617
XR_002651121.1 other upstream 178853 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other upstream 178872 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other upstream 180617 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other upstream 182428 10142124 ~ 10148318 (+) False LOC103031168
TU204035 other upstream 477892 9851218 ~ 9852854 (+) True G150674
TU204186 other downstream 46418 10409793 ~ 10442243 (+) False LOC111194616
XR_002651126.1 other downstream 79615 10442990 ~ 10443712 (+) True LOC103024215
TU204458 other downstream 259284 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 377358 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1189164 11552539 ~ 11561544 (+) True LOC103037021

Expression Profile