RNA id: TU204163


Basic Information

Item Value
RNA id TU204163
length 235
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G150752
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10280470 ~ 10281215 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaatcaatatttggtggaataaccctggtttttaatcacagttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataacttttagcCGTACCTGGTGAAATAAttgcagcagttcagtttggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttgataaaatcaaagaaactcatcatttttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204152 lncRNA upstream 640 10191520 ~ 10279830 (+) False LOC103021810
TU204118 lncRNA upstream 101993 10168326 ~ 10178477 (+) True G150735
TU204114 lncRNA upstream 160701 10119321 ~ 10119769 (+) True G150733
TU204105 lncRNA upstream 183708 10094591 ~ 10096762 (+) True G150725
TU204063 lncRNA upstream 248394 10010250 ~ 10032076 (+) True G150698
TU204168 lncRNA downstream 20158 10301373 ~ 10307405 (+) True G150757
TU204161 lncRNA downstream 49531 10330746 ~ 10363375 (+) False LOC103040721
TU204192 lncRNA downstream 133698 10414913 ~ 10434013 (+) False LOC111194616
TU204400 lncRNA downstream 230873 10512088 ~ 10515654 (+) False G150883
TU204407 lncRNA downstream 230873 10512088 ~ 10518923 (+) True G150883
XM_007241656.2 mRNA upstream 72624 10193960 ~ 10207846 (+) True LOC103021810
XM_022678887.1 mRNA upstream 127753 10142124 ~ 10152717 (+) False LOC103031168
XM_022678884.1 mRNA upstream 127756 10142124 ~ 10152714 (+) False LOC103031168
XM_022678883.1 mRNA upstream 128959 10142124 ~ 10151511 (+) False LOC103031168
XM_022678886.1 mRNA upstream 128959 10142124 ~ 10151511 (+) False LOC103031168
XM_022678898.1 mRNA downstream 39054 10320269 ~ 10361468 (+) True LOC103040721
XM_007242241.3 mRNA downstream 101665 10382880 ~ 10386158 (+) True LOC103040403
XM_022678901.1 mRNA downstream 109264 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA downstream 109264 10390479 ~ 10407671 (+) False LOC111194532
XM_022679379.1 mRNA downstream 128744 10409959 ~ 10436494 (+) True LOC111194616
XR_002651121.1 other upstream 128577 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other upstream 128596 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other upstream 130341 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other upstream 132152 10142124 ~ 10148318 (+) False LOC103031168
TU204035 other upstream 427616 9851218 ~ 9852854 (+) True G150674
TU204186 other downstream 128578 10409793 ~ 10442243 (+) False LOC111194616
XR_002651126.1 other downstream 161775 10442990 ~ 10443712 (+) True LOC103024215
TU204458 other downstream 341444 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 459518 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1271324 11552539 ~ 11561544 (+) True LOC103037021

Expression Profile