RNA id: XM_022679379.1


Basic Information

Item Value
RNA id XM_022679379.1
length 1006
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC111194616
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10409793 ~ 10442243 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTTCTGCAGGTTCTGAGAGCGTGAGGACACTGAAGCATTTAACTGTAAGAagaggagaatctctcactgttCCTTGTTTATATGAAGAGAAATATAAATCACGCCGTAAATACTGGTGTAAGGGGGAACACTGGATCTCGTGTAGAATAGTAGCCTATGCCAACTCAAGTACTACAAGAATATCAGTCACTGATCATCCATCCCAGAATATGTTTTCTGTTGATCTGAAGAACCTCCAAGACTCTGACTCTGGATGGTACTGGTGTGCTGTGGAAATCGGTGGGGATGAAACTCCAGATGTCGGGGATTATGTGTATCTGACGGTCAGTTCAGATCCTGCTGTGTGGGTGGAGAACAGTAGAGTGATTGGTCAGGAAGGGGGCGGAGTCAGTGTCCAGGGtttctacagctctggatatGAGAATAAAGAGAAGAAGTGGTGCAGAGTTAAAACCTGGAGCTGCTACCCATTCCAGGATTCAACAGTGAACATCAGTGATGATAAGAACAATAGATCCTTCAGAGTGGAGATGATTGGGCTGCAGAAGAGTGATGCTGGCTGGTACTGGTTCAGTGCAGGAGGTGTGGGAGTTACTGTTCACCTCACCGTCACTGAAAGACCTACAAcaacaacagcagctGTGACTACAGTTCCTACCACTCAGAAAACCACCACCAAAACGTCTGACAAGAAAACTGTTGAACCAACAGACACTCCAGCAGCTGTGACTTTAGCTACTGGAAAATCTGAGAAACCCGAGGCTCCTACTAATCCTCCAGAAGGTCCGGTGTGGACCCATCCGCAGGGTAAAGATGGTGCTCTGTGGGCCAGCGGCGCACCTGGACGACACCCGCTTCTAGTCTCTGCACAGGGAAGGCCTTCCCTGGAGCTGGCTCGGCTGGCGTACCCTCTCGGTGATCCGTCGGGAATCAGTGGAGTTCTGTATCGCTCAGAACTAAACCCACAAACTCTGAGAAACCCAGGAAGAAGCAAGAATTCATGA

Function

GO: NA

KEGG:

id description
K06719 CD300; CD300 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204161 lncRNA upstream 46584 10330746 ~ 10363375 (+) False LOC103040721
TU204168 lncRNA upstream 102554 10301373 ~ 10307405 (+) True G150757
TU204163 lncRNA upstream 128744 10280470 ~ 10281215 (+) True G150752
TU204152 lncRNA upstream 130129 10191520 ~ 10279830 (+) False LOC103021810
TU204118 lncRNA upstream 231482 10168326 ~ 10178477 (+) True G150735
TU204400 lncRNA downstream 75594 10512088 ~ 10515654 (+) False G150883
TU204407 lncRNA downstream 75594 10512088 ~ 10518923 (+) True G150883
TU204410 lncRNA downstream 78054 10514548 ~ 10518383 (+) False G150883
TU204412 lncRNA downstream 78054 10514548 ~ 10518923 (+) False G150883
TU204467 lncRNA downstream 284008 10720502 ~ 10724360 (+) True G150902
XM_022678901.1 mRNA upstream 2288 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA upstream 2288 10390479 ~ 10407671 (+) False LOC111194532
XM_007242241.3 mRNA upstream 23801 10382880 ~ 10386158 (+) True LOC103040403
XM_022678898.1 mRNA upstream 48491 10320269 ~ 10361468 (+) True LOC103040721
XM_007241656.2 mRNA upstream 202113 10193960 ~ 10207846 (+) True LOC103021810
XM_022679380.1 mRNA downstream 4229 10440723 ~ 10452490 (+) True LOC111194617
XM_022678905.1 mRNA downstream 121620 10558114 ~ 10583740 (+) False LOC103021908
XM_022678904.1 mRNA downstream 121620 10558114 ~ 10581973 (+) True LOC103021908
XM_022678907.1 mRNA downstream 132791 10569285 ~ 10583740 (+) False LOC103021908
XM_022678906.1 mRNA downstream 132797 10569291 ~ 10581973 (+) False LOC103021908
XR_002651121.1 other upstream 258066 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other upstream 258085 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other upstream 259830 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other upstream 261641 10142124 ~ 10148318 (+) False LOC103031168
TU204035 other upstream 557105 9851218 ~ 9852854 (+) True G150674
XR_002651126.1 other downstream 6496 10442990 ~ 10443712 (+) True LOC103024215
TU204458 other downstream 186165 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 304239 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1116045 11552539 ~ 11561544 (+) True LOC103037021
XR_002651134.1 other downstream 1151415 11587909 ~ 11604041 (+) False LOC103035375

Expression Profile