RNA id: TU204407


Basic Information

Item Value
RNA id TU204407
length 3380
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G150883
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10512088 ~ 10518923 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaatcggtgccatttttgttgtccaccgagatgcactgatcctacatctacctaccaagtttcatttctctatgacttacggtttaggctgcacaactgtttttacaggagaaaaagaataataataataataaatatagccgcaagcggcgattTACGGGGTTCGAGCGTCACAGGCAAAGAGGCCCCTGGAGGCCAGTTAGGCTTAAAACCTGTTGCTGGTTGACCGTCATCACCAAACTGGATAACCAAGCTGGGTAACCagcgtgaccataaagaccaaAATGACAATGCTAGATGAGTGGTGTGAGTAAACTAGTTGAAAAGCATTGATAAATTGAGCTGTAGTGTTCATCAGGTTTTATGTGGTGTCTTGCTGCACTCTAGTGGGCATTTGGTGAAAAAATTTCAGTTCTTAAATTCAAAAAACACAAGGCATAAAAAGGGCATATAAATAACCCATATATAGTGTATAAGTTTTGACCTGATAAACATTCtgcctgtcaaaagcttgctggaatgtgattggctaatagtgaccacaaaagtgtccatatcaaattttcatttggtgtaccattagtgcatgggccatagatgataattggcaaggatgaccttgatagcttgtatggtTGTAGAGAAACAGCTATTGAGCATTGGCTCTGCCCCCTGGGGGTGTATGTCTACTTAAACTCACAGGGTATCTGAgaatcatgtaatgatcaaaggactgaagtggtattagtgtcaggttaagcattcaaaagttataagtgttaaagacattttactgcaccatggtaaaactaatttgcatatggcggccatattgtttataaatgtaaagatttttttttataattattgaggagtaagctctgctgaactgtttgacaccaaacatgtcatgattggtcaagGAGGCAAAGACAagatctcaaaagtaggttttgcatattatgcaaataaaaaaaaaattaagtgggtGGAGCATAAATAAGAATGACCCAGGTGGCTGACTAGCATGACCAAGAAGGATAAATATGTTCAATTaagcaagacaaaaaagattaaataagttcagcagagctttaatttagaataattcaaatgtagctgtttcaccaaatgaccaccagagcgcagcaagagaccacatataacctgctggaaatctatcactctataagtaagacagaacattccctatcagtgtgtttctatttattaaaaagagaagaaaagtccgattgggctccaaattggtactcatgatcaagtggtctgcatatatatgtgtgtaaatttgtgtgttgatagggtcaaaggttcctgacttctgtccatttaggtttgaaaaaagcgataatacaggcttatggcctacaaaatggctgttgctctttggccatattagaggcaaaaaatatctgatttggctcaaaatttgcaatcaggatcacaatatcagtctatatatgtatgtaaatttctgtgttgatagggtcaaaggttcctgacttatgtccatttaggtttgaaaaaagcgataatacaggcttgaggcctacaaaatcgctgtagttttccagccgttgtagagggaaaacatgtccgatttggctgaaaatttgcaatcaagatcagattatcagtctatatatgtgtataaatttgtgtgttgatagggtgaaaggttcctgtcttctgtccatttaggttggaaaatagcgataaatagaataaattgaaaatagttattttttcactgtagagcctactgaagacttatttggctcatacttggcaaatgtgcttcaaatgtcattgttaattagtagcttcaacagttttggcatgttttaaactttgacagagttttggccaaataactctgaaaaggctttcacgtacatgtttgatcaaggtttatgggcctcaaatagttaaaatgtcaagatttttttgataattatttacctacagggtctcaagattgcatcaagaccaaagttattttgattgattaaggacttaaagacaagttcgaaaagagcaatttttactcttttggccACTGATGAAAATCTTTCCATTTTTggtaaatatatgtaattacaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcatgtcaaaagcttgctggaaactgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaCGGTCTAAAGTGGCATTAGTGTaggtttaagcattcaaaagttacagctgttagagtaaatttgggtgtgccacggtaagattaatttgcatatggcggccatattgtttacaaatttcacaatttttttgataattattgaggttgggactctgctgagttgtttgacaccaaatatgacaggattggtcaatgaccctaggacaagttctcaaaagtaggttttgcatattatgctaaatagcaaaaaatctaagtgggcggagcttagtggttctattgacctttttgatttGCCATTAACCAAGGAATCATATAATGCAAGAATTTTTGCTCTAGCTATCAGGGCGTGGCAGTTACGAGGCCTAACGCGTTGACCTTCgccatagcgcccccttgaggccgatcgggctcatcttttgaatctgagtagcggtgagaagtactaccatatgaccaagtctcagccctgtaggccttacggtttcttctgcccgatcacttctatggcagaaaaagaataagaataataataataataataataaatatagccgcaagcggcgattTACGGGGTTCGAGCGTTACAGGCAAAGAGACCCCTGGAGGCCAGTTAGGCTTAAAACATGTTGCCGGTTGACCGGCATCGCCAAACTGGatgaggatgaccagcatgaccgtgaagaccaagctagattaccagcatgactaatctggatgacaaacttgttgaccatattgaccaagctggaagaccataatgaccaaactggatgaccagcatggcaaaggtggttggctagtatgaccaagctggaagaccaccattactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204192 lncRNA upstream 78075 10414913 ~ 10434013 (+) False LOC111194616
TU204161 lncRNA upstream 148713 10330746 ~ 10363375 (+) False LOC103040721
TU204168 lncRNA upstream 204683 10301373 ~ 10307405 (+) True G150757
TU204163 lncRNA upstream 230873 10280470 ~ 10281215 (+) True G150752
TU204152 lncRNA upstream 232258 10191520 ~ 10279830 (+) False LOC103021810
TU204467 lncRNA downstream 201579 10720502 ~ 10724360 (+) True G150902
TU204468 lncRNA downstream 201579 10720502 ~ 10723132 (+) False G150902
TU204469 lncRNA downstream 201579 10720502 ~ 10724360 (+) False G150902
TU204470 lncRNA downstream 201579 10720502 ~ 10724360 (+) False G150902
TU204474 lncRNA downstream 201579 10720502 ~ 10724360 (+) False G150902
XM_022679380.1 mRNA upstream 59598 10440723 ~ 10452490 (+) True LOC111194617
XM_022679379.1 mRNA upstream 75594 10409959 ~ 10436494 (+) True LOC111194616
XM_022678901.1 mRNA upstream 104417 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA upstream 104417 10390479 ~ 10407671 (+) False LOC111194532
XM_007242241.3 mRNA upstream 125930 10382880 ~ 10386158 (+) True LOC103040403
XM_022678905.1 mRNA downstream 39191 10558114 ~ 10583740 (+) False LOC103021908
XM_022678904.1 mRNA downstream 39191 10558114 ~ 10581973 (+) True LOC103021908
XM_022678907.1 mRNA downstream 50362 10569285 ~ 10583740 (+) False LOC103021908
XM_022678906.1 mRNA downstream 50368 10569291 ~ 10581973 (+) False LOC103021908
XM_007238412.3 mRNA downstream 66836 10585759 ~ 10593172 (+) True rab8a
XR_002651126.1 other upstream 68376 10442990 ~ 10443712 (+) True LOC103024215
TU204186 other upstream 69845 10409793 ~ 10442243 (+) False LOC111194616
XR_002651122.1 other upstream 360214 10142124 ~ 10151874 (+) False LOC103031168
TU204458 other downstream 103736 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 221810 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1033616 11552539 ~ 11561544 (+) True LOC103037021
XR_002651134.1 other downstream 1068986 11587909 ~ 11604041 (+) False LOC103035375
TU205216 other downstream 2584222 13103145 ~ 13107515 (+) False LOC103033117

Expression Profile