RNA id: TU204467


Basic Information

Item Value
RNA id TU204467
length 2249
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G150902
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10720502 ~ 10724360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCCAGAAATGGTTTCATTTAATAGGCTCCATGAAGccaaaaatcaaaacaaacacaaaacaaagtAAGGAATAGTGAGTCAATGTCGATACAAAGAACAGAGCACATTCTCCCCAATCTTAAAAGGAGTCATAGTAACAGGTTTTCAGAGTTAACTTATCTTCCACATTgagcactatatatatttttttttaggagtttCGGTCCATCATTACAGCACATGGTTAAAAATGCAAGAACGTTGAGCAGAGCAGAGATACCTCGGGGAGAGTGAGGCTGAACGTGGCAAGCTGCAAGCTGCACTTCAAGAACAGCACCAGTGCTGGCCACCTCACTCGAGCAGTTCACCAGTCTGAAAGGAATTCACTTTTTGGATACTTGAAATGGACAAAAAGGTcttttattatattctattaaactttcaattttttatttcaaactgCTTGATTCATCATTGTTACATCAGTTATATTTGAATAGTTTACCAAAAAGCAAAAACCACAGTAGCTAAAAATGCCCTTTGGTGAGGTAGTTGCCTGTTAAAATGTGGGGTAGCTCATGGCTTTATAAAGCTCAAGACGCAAGACATCCCTTAGGCTTCAATCTACAGTAACCCCAATACAAATGAAAGGGGTTTTTGGACCAATAAGGAGAGCAATACTGTGGCAAATGGTCAGAACGTTCGGTCTCACAAGAGgctcagtataaaaaaaaaaattgctaatGTAAGAGAGCATCCAAGAGATGCTCCTTGCAAAGAACATTTCACAGCCAATATGAATAGCCCCCCACCCCttcaacaatattttaaaaatacaaaagaaaactaTGGAATGACAGATCCGTGGAGTGCATCTTTAGAAAAACGCACAGCCAGTGAAGTGATGGGTCTTGGGGTTTACTCGTGTGCAGCTGAGGAGGAAGCAGGCACACATAAGACACTGAAGCATCTGAACACAGTTTTGTACACAACATCCCTCACTCCTATCAGTTTgaacaaaaagcaaaatcaaaagaaataaaaacagtggcCCTAATATCAATTGACCTGAGGGATGGTCATTGCTGGCTGTGAATGGTTTTGAGCTACAGGGAACACAAGCAATTGAGCACAGAGTCTCATCTGAGAGTGGGCATCATCCCTCAAAGTCATGAGGTCAAAAGCAAGGTGGGAAAGTTACATCCCACTTTTGGACATTAACCTAAAGCATTTCTTATTACATATAGAGAAAACTGGTCCAAATGTGTAGGAATGGCTAAagacttagaaaaaaaaattacaaagaaaaaaacaaaaaaaaaaaatgtacactggTTTATCGCTTCCTCAGGGCAAGTGCGCTACAACTGGGATGATGTCAGAGAGGCTAATACGTACCATAGCGGTCATAGCCATCTCTGTAGGAGCCTCCACGATCTCCGTAGCCAGAACTCCTAGACAAAAAGACAGATATTTTGATCATTTATGAGATCAACttacatatccaaaataaaaataaactaaaatctaAGATAATAAAAGTTGACCATTTCATTTACCTTACCTGTCCCTGTTGTAGTCTCCACCCCCGGAAGAGTAGCCACCACCTCCGCTCTTGTAGCCACCACCTCCATAGCCCCGGTCTCCACCGCCATAACTGCGGTCTCCTCCACCATAACTCCGGTCTCCGCCATAACTTCTGTCACCACCGCCATAACCTCCACCACCTGACAaccagcaaaaaatatttttagaaggACTGAATACTTCAGAATATGTATTAAAattctttcaaaataaaaaacgaATAATATAAGTGAGTGATTGACACGTTTGCCCATCCTCACCTCGAGGCCCACCTCTACCTCTTCCGCCTCTGAAGAATCCACCGCCTCCTCTTCCTCCGCCACCTCTGTATCCACCGCCACCACCTGACCGGCTGCCACCTCCCTTTCCTGCCTCATCCACACGGATCGCCCTGCCATCCACAGACTTTCCATTCATGCCTTCCAGGGCATCCTTTGCATCATCAGGATTCTCAAATGTAACAAAGCCAAATCCCCTCGACCTGTTGGTCTCCCTGTTTCTGGCGACATGGAcgTTTGTGATGACACCATACTTGGAGAAAGCTTCTTCCAGAGACTGCTCTGTGGTGTCGAAGCTGAGACCACCGATGAAAAGCTTTCCTTCGTCAGACATGGTGCTGCTttctctgtgctgctgctgctgcgagATTGAAGACGCGAGATGTCCTCCGACTTCAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204407 lncRNA upstream 201579 10512088 ~ 10518923 (+) True G150883
TU204412 lncRNA upstream 201579 10514548 ~ 10518923 (+) False G150883
TU204410 lncRNA upstream 202119 10514548 ~ 10518383 (+) False G150883
TU204400 lncRNA upstream 204848 10512088 ~ 10515654 (+) False G150883
TU204192 lncRNA upstream 286489 10414913 ~ 10434013 (+) False LOC111194616
TU204539 lncRNA downstream 69188 10793548 ~ 10804059 (+) True G150938
TU204557 lncRNA downstream 215623 10939983 ~ 10942003 (+) True G150953
TU204581 lncRNA downstream 292393 11016753 ~ 11017418 (+) True G150976
TU204637 lncRNA downstream 348539 11072899 ~ 11073193 (+) True G151022
TU204643 lncRNA downstream 384311 11108671 ~ 11108906 (+) True G151028
XM_007238425.3 mRNA upstream 2684 10706239 ~ 10717818 (+) True LOC103047654
XM_007238424.3 mRNA upstream 18985 10697700 ~ 10701517 (+) True ndufa13
XM_022678915.1 mRNA upstream 27119 10645390 ~ 10693383 (+) False LOC103022822
XM_022678912.1 mRNA upstream 27119 10645391 ~ 10693383 (+) True LOC103022822
XM_022678913.1 mRNA upstream 27119 10645756 ~ 10693383 (+) False LOC103022822
XM_022678921.1 mRNA downstream 163266 10887626 ~ 10935801 (+) True LOC103031053
XM_022678925.1 mRNA downstream 266745 10991105 ~ 11016626 (+) True LOC103025147
XM_022678926.1 mRNA downstream 266749 10991109 ~ 11016626 (+) False LOC103025147
XM_007258443.3 mRNA downstream 544092 11268452 ~ 11271625 (+) True LOC103037664
XM_022678929.1 mRNA downstream 554005 11278365 ~ 11531411 (+) False LOC103037335
TU204458 other upstream 94491 10622659 ~ 10626011 (+) False mau2
XR_002651126.1 other upstream 276790 10442990 ~ 10443712 (+) True LOC103024215
TU204186 other upstream 278259 10409793 ~ 10442243 (+) False LOC111194616
XR_002651122.1 other upstream 568628 10142124 ~ 10151874 (+) False LOC103031168
TU204536 other downstream 16373 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 828179 11552539 ~ 11561544 (+) True LOC103037021
XR_002651134.1 other downstream 863549 11587909 ~ 11604041 (+) False LOC103035375
TU205216 other downstream 2378785 13103145 ~ 13107515 (+) False LOC103033117
trnar-ccg_2 other downstream 2551151 13275511 ~ 13275583 (+) True trnar-ccg_2

Expression Profile