RNA id: TU205172


Basic Information

Item Value
RNA id TU205172
length 235
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G151410
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 12993364 ~ 12993598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACTGCACTAAAGCTTAAGTGGACTCGTAGCTATTAATTGTCTAATTGATGCTATTATTATGAGTTTGAACCTTCTTCTCACCACTAGTATGAAGATATCAGAACACCTGAACATAATAACAACAGACTTACATTATGTGATGTCACAGTAGGGATGTGCAATATTGTATCGTATGCAATCATATCGCCTACATTTCTGAATATCGTTAACAATATTCAACCCTGAAATAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205136 lncRNA upstream 180490 12777716 ~ 12812874 (+) True G151377
TU205104 lncRNA upstream 259097 12732022 ~ 12734267 (+) True G151347
TU205030 lncRNA upstream 386277 12544064 ~ 12607087 (+) True G151302
TU204988 lncRNA upstream 699843 12293082 ~ 12293521 (+) True G151272
TU204980 lncRNA upstream 744177 12248490 ~ 12249187 (+) True G151264
TU205221 lncRNA downstream 107796 13101394 ~ 13131451 (+) False LOC103033441
TU205297 lncRNA downstream 220762 13214360 ~ 13214585 (+) True G151504
TU205300 lncRNA downstream 236542 13230140 ~ 13236737 (+) False LOC107197015
TU205301 lncRNA downstream 236542 13230140 ~ 13236737 (+) False LOC107197015
TU205311 lncRNA downstream 298733 13292331 ~ 13292685 (+) True G151517
XM_022678970.1 mRNA upstream 117636 12848418 ~ 12875728 (+) True LOC107197877
XM_022678971.1 mRNA upstream 117636 12848418 ~ 12875728 (+) False LOC107197877
XM_022678961.1 mRNA upstream 471070 12295483 ~ 12522294 (+) True LOC103039850
XM_022678960.1 mRNA upstream 471070 12295714 ~ 12522294 (+) False LOC103039850
XM_007258450.3 mRNA upstream 806131 12183829 ~ 12187233 (+) True LOC103040483
XM_022678982.1 mRNA downstream 20185 13013783 ~ 13024569 (+) True napg
XM_007235559.3 mRNA downstream 109517 13103115 ~ 13109604 (+) True LOC103033117
XM_007235560.3 mRNA downstream 117126 13110724 ~ 13131453 (+) True LOC103033441
XM_007235576.2 mRNA downstream 155511 13149109 ~ 13171989 (+) True LOC103038185
XM_022678984.1 mRNA downstream 183060 13176658 ~ 13181747 (+) True LOC103033765
XR_002651134.1 other upstream 1389323 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 1431820 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 2252226 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 2367353 10622659 ~ 10626011 (+) False mau2
XR_002651126.1 other upstream 2549652 10442990 ~ 10443712 (+) True LOC103024215
TU205216 other downstream 109547 13103145 ~ 13107515 (+) False LOC103033117
trnar-ccg_2 other downstream 281913 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 286254 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 287098 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 287556 13281154 ~ 13281226 (+) True trnar-ccg_5

Expression Profile