RNA id: TU205221


Basic Information

Item Value
RNA id TU205221
length 2303
lncRNA type read_through
GC content 0.34
exon number 2
gene id LOC103033441
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13101394 ~ 13131453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaaaaaaaaacgtttCAACGGTTCAGGAGGACATGATAATAGATGTATTCCAAAATGAAGGCTGCAGTCTAGGTGGGCCACTATGTCAGGCTGTTCCAAAGTAGAGTGGAGTTGTATTAGGTGGAGAAATTTGAAGTTTGCAACCAATGTATACTTTACCCACAGTTCTCTACTCACATTTAACATAGaaaaattagagaaaaaaaattacccgaaactttaaaaatggaaaaaagactttttttttatattaatgtattttaacacaaattaatCATTGTACCAAGTTTGGCCCCAACTTTCTTctatgtttttattctttttacatAGAGAATAAAAAATTTGAGAAATacattagagaaaaaaaaaattacccgaAACTAAGATATGATGTTGCAATGAAGCCTTGTTCACCTGTTTCGTATCTGGATACTAAAACAGGATACAAAAAATTACTCTTTGTAGGACCATCTAACTATGCAACTATGAGTGCAGCTCATGCTTTGGAATACAGCTAATGTGTttagcacaaaaaaaagaggTATCAAAGGTGCAAACAGCTGTGTAAAATATTCAGAAAGGTCCATCTCTGCCAGAGTTCTTCTTCGTCATGCCCAAAATATCAGTGGTTGGGTTACGTTTTAACTGTTGGCTACACTGCCCCAGCAGTTTTCACTGATAATGCTTCATTGCATCCGTATCCATAAGCTGTGCACAAAAACGAATTAAATGAACAAAGAGTACTGTATtcatatttaacataaaaaattacCTTACAACATTTTAGAAGCTCTAGGTCTAGGTGAAGTTGGTCAAAGTTGTGctttccaaaaatatataacatccCAGTGTCGACTACAGGACGATGGGTTTCCATTCTCAGTCTTGAGTTTCTTGAGtagtttttttatcttaatctaAGTAAGTTTATCTTCCTTGCCACTCTAAATAAGAAGGTTCGAAGAtaggctgcacgatattggagaaaaaaactgacattgcaatagttttttttctgctgtaaatatTGGGATATAAACAAATATGGAAAAATTTACTCAAAAAGATCAAACCCAAAgtcaacagaagtcaatgatccaaggTCACAACATTATGATATTATTAATGCATTCTGAGTATTCAAtattggaataaaataaatgcctCTGATAGATTTACcatgaaaaataagaacagtgaGAATTTTCCTTTTGGATCAAGCATCAAAAATGttgcatttaattaaattacctTACATGACAATTGACCACTCCAACATTGCAGTGGCAATActaaaatgatatattgtgcCGCCCTAGTTATAAGTACCGTGTAATATTGCAGTATGAAGCTTCAGTTGCATTATGATGAATCATGTTTTGGAGCAGCATCAGACTTGCCCTAATCTGTTAGAAATGATTCAGATTTAATTTCAGCAAATGCTGTCAGTCAAGTTATATACTATTCAAGACTTACGCAAAGCATTAATAAAGATAATTACTCCCTCGGGCAGGAGTTATATGTGAAATTGATTTGCAGGTTTGCTAATTAGGTATAGACCAAGATGTTAACGCCACTGATTAAGGACTGATTTTGTTTGATTATGTGCAAAGGAAAAGGTACAATAATGCAGTGCCATTTTCTATAGACCACTGACTGAAACCCACTGCCAGTGTAAAGATGCATTTTATCATCAGTCATGTTATAAAGATCCAAACATCAGATATAAATTCAGTTTTAAAAGCTGAAACCGTAATGCATATGCCAAATATGATTATGAGTGCAAGTGTAAACCTTTGAAAAAAGTGGAAATATATAAAGATCTAACCATATTATGTAAATGCCTTCTTTACTAGTTCTAACAACGATCTCAAAACTATGGAACGAGAGGCTTTGAGAATATGTGATGCGATACAATCAAACGGCCGTTCATCATGTGATGAACATGAATGAAGACTGTCAGCACTGTTTGAAAGGACTGCTTACAGTAAGAAGGTGTTGAAGCTTTTGTTATTTCCTAAAGACAAGGGAAAAGTTTAAAGTGATCTCTACTAACACATAGAAAAAAGTGGGAGCTAGGTACCATTCTGGGATGAAGgactcttcctcctcttcctcttcctctggaTGTGTACGCACCAACATCAGAACTTCAGTGCTCCTGGTGGACTTCTCCCTTTCCGTGGTTCAATTTTACGCCCAAGTCTATGTTGCATTATCTGTGAAAAACACACTGCCTGAAAATGTGTGgatataagaaataataaaagtcactttaaaaatggaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205172 lncRNA upstream 107796 12993364 ~ 12993598 (+) True G151410
TU205136 lncRNA upstream 288520 12777716 ~ 12812874 (+) True G151377
TU205104 lncRNA upstream 367127 12732022 ~ 12734267 (+) True G151347
TU205030 lncRNA upstream 494307 12544064 ~ 12607087 (+) True G151302
TU204988 lncRNA upstream 807873 12293082 ~ 12293521 (+) True G151272
TU205297 lncRNA downstream 82909 13214360 ~ 13214585 (+) True G151504
TU205300 lncRNA downstream 98689 13230140 ~ 13236737 (+) False LOC107197015
TU205301 lncRNA downstream 98689 13230140 ~ 13236737 (+) False LOC107197015
TU205311 lncRNA downstream 160880 13292331 ~ 13292685 (+) True G151517
TU205313 lncRNA downstream 163189 13294640 ~ 13296287 (+) True G151518
XM_022678982.1 mRNA upstream 76825 13013783 ~ 13024569 (+) True napg
XM_022678970.1 mRNA upstream 225666 12848418 ~ 12875728 (+) True LOC107197877
XM_022678971.1 mRNA upstream 225666 12848418 ~ 12875728 (+) False LOC107197877
XM_022678961.1 mRNA upstream 579100 12295483 ~ 12522294 (+) True LOC103039850
XM_022678960.1 mRNA upstream 579100 12295714 ~ 12522294 (+) False LOC103039850
XM_007235576.2 mRNA downstream 17658 13149109 ~ 13171989 (+) True LOC103038185
XM_022678984.1 mRNA downstream 45207 13176658 ~ 13181747 (+) True LOC103033765
XM_022678985.1 mRNA downstream 98651 13230102 ~ 13236725 (+) True LOC107197015
XM_022678987.1 mRNA downstream 126684 13258135 ~ 13265901 (+) True LOC111194542
XM_007235578.3 mRNA downstream 136337 13267788 ~ 13270876 (+) True LOC103039137
XR_002651134.1 other upstream 1497353 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 1539850 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 2360256 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 2475383 10622659 ~ 10626011 (+) False mau2
XR_002651126.1 other upstream 2657682 10442990 ~ 10443712 (+) True LOC103024215
trnar-ccg_2 other downstream 144060 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 148401 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 149245 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 149703 13281154 ~ 13281226 (+) True trnar-ccg_5
trnar-ccg_6 other downstream 150178 13281629 ~ 13281701 (+) True trnar-ccg_6

Expression Profile