RNA id: XM_007235560.3


Basic Information

Item Value
RNA id XM_007235560.3
length 7211
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103033441
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13101394 ~ 13131453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGTCCTGTCAGTCAGGTCAGAAAGTAGCGGAGAGACCCGCCCCCCTCGCGGCTGCAGAAAACAAGGGCATTGGGTTGCTGTTGGTTTACCCGCCcgagctctgctgctgctgctgctgagcggGATGCAGCTGACCTGTGGAGGATGCTTGTGGACAACGAGCGCATCTTATAGCCCTATAGGACTGCTACTGAAGACTAGTCTTAGATGAAGGAACGATGCGAGGCGTATCTTgtcctgtttttgtttacatCGGCTAAAAAGCAGTTGATTGTATCCATCCCCTGCAGAAAACCAAGGCGCAGCCTGCAGAGAccctactactaccactacatCCACCCCTGTGCAGCATTATAGCAGCAGCTTCCCAGGTAAACCGACACCATGTTGACTAGCATCACCGAGAGTCTCCTCTGCTGTCTGACGGGCAAGACTACCAGTGTGGTCCTACCTGTGGAGTCTTCTGATTCTGGTCCTGCTGATGGCTTTGAGTTTGTTGAGGTGAAGCCGGGCCGTGTCCTGAGGGTGCGGCACATCCTACCTGAGCGCCCGGATGCCACTGAGCCGAAACCAGAGCAGAGCTCCATCATCCACTGCAAGCGCAAGATAACCGTGTACCGCAATGGGCAGCTGGTGATCGAGAACCTGGGCGATGTCCTGCACTCTGAAATCCTGCAGTGCCAGAACGGAGATGTGGAGCAGTGCAGCACCGTGGAGGTAGAGTTAGCTGACTACTCCACTGCCCCATCTTCTCCCGACCCCAAACCTGCGCCTCCACTTCCAGTCTCAGACCAGCAGAGGCCTGCACCCCCACCCAGGAGACGCAGGCGGAAGCCAAAGCGCACCGTTGCCATCGATTCAGAGCGCCACATCACCAGCTGTAAGGGTACACATTCGGACGTAGCCCTTTTCTTCATCCACGGTGTTGGGGGCTCGCTTGACATCTGGGGTCGCCAGCTGGACTTCTTCTCTAGGCTGGGCTATGAGGTCGTGGCCCCCGACCTGGCAGGGCACGGAGCCAGCACAGCCCCACAGATAGCAGCGGCTTATACCTTCTACGCTCTGGCTGAAGATCTGCGGGCAATATTCAAGAGATACGCTCGTAAGCGCAATATCCTCATCGGCCACTCGTATGGGGTATCGTTCTGCACGTTCCTGGCACACGAGTACCCTGAGCAGGTGCATAAGGTGGTGATGATTAACGGGGGAGGCCCAACGGCACTCGAGCCCAGCCTGTGCTCAATCTTCCAGCTACCCTCCTGCGTCCTGCACTGCCTGTCCCCCTGCCTTGCCTGGAGCTTTCTCAAggCTGGCTTTGCCAGGCAGGGCGCTAAAGAGAAGCAGCTGCTGAAGGAGGGAAATGCCTTTAATGTGTCTCCGTTTGTGCTGCGAGCCATGATGAGTGGTCAGTATTGGCCAGAGGGAGATGAGGTGTACCATGCTGAGCTCACTGTGCCCATCTTGCTGGTGCACGGCCTCTACGACAAGTTTGTGCCAATGGACGAGGACCAGCGTATGGCTGAGATTCTCCTCTTTGCCTTCCTGAAAGTGATAGAGGAGGGCAGCCACATGGTCATGATGGAATGCCCTGAAACGGTAAATACACTTCTTCATGAATTTTTCCTCTGGGAACCAGATGTCTCCGGAAAGGATTCAGCCTCCAAACCAACTTCTGACCAAACCGCAGTGACAAATGCCACAACTGTCGCTCCAGTCGCCACTACACTCAGCACGACTGAAGAAACCACCGGGACGCCCAAATCCAACAAGCCTCtaaaaaaataaccaactaggattggtgtttttttttggggtaaACCAGAATCAGAAGGCTGTTTGACGGCAGGCGGTACCGAGTCGAACGTTCACCCAGGCTTAGCGCTGTTTTTTGGAGGTGAAGTTTGAGCTGAAGGTTCTGAAGGATGTTGCACCAGGGCGGCTAGGAAGGTATGTGTGCAGTGAGACTCAACAATGCCAATAGTGACCAGAGGataaaagaaaggaaggaaagcTTAAACCCAGTTTAAGACTAGAAATgacagtttattaaataaaaaatcgtTGGCTTCACTTCTCTCTGCTACCTTTGGACATATATCTTTCCTTGTTGTGTCGTCGTCTAAACAAAAGAAGTGGAGCTCCGCCCAGTGGGCTCTTTAAAGTGCTTGGGCTCTGACTGGACCAAACTGAAGCAAATCAAAACAGAAAGGTTCTGAACTGATCCGGGCTGGACTTTAGTGCGGAGGAGGCCGGTCTCTATGCTCGTACAGTGCTTGTGAATCTATTGTGTGATCTATTGTTCCCGACCCAGACCACGTGAACACGTCAAAGAGGGGGAAACAGAAAATCCAGTTTCAGTCCACGTCTAAGTGTGTCGTGTTTTTATACATGCCCTTCGCTGGATGAACGCTGTTATCTGTCCGGAGTAATAGCAACTtagtaataacaacaataattctcttataagaaaaaaatggatattAATACAGTAGTGCAATTGTCTTCCTGTGTTAATGTGCCCACAACAGCCCCCAGAGGACTGGAATATAGGGAGGAGGCTGGGGGATGAGAAGTGGGATGGAGACGTTCATCAAATtccataaaattttaaaataacccaCCTTGGTGTCCTCATAaagcttaaaatattaaaaatattgacataaacataaatatatttaaatatgcacatatatatcatataggtataatatatgaatagccatatatatatatatatccaactATATATTTCCCCATTTAATGAATGTTGaccaaaacaagtaaaaaaacatctacaaaGCTGTGCATGATAAagatggggggaaaaaaacgtgaaaaaaaaatcacatgtgCCCGACAAGCAGAAAATTGTGTCAGTAGGAGAGCACCCATGTTTCCTAGCAACCAGGAATTAGAGGAAAGCAAAGATGAATGAGACATAGCTGGCAGTGGAGCGCCGCTAAAAGATGCTGTTGCTGTGCCAACGATGATATGATTTTGGTGCtgtcataaaacacacacacacacacaggaaataagctaacacacaccacagtaCTGCTAATGTAGCTCACAGATACCAATATGCCAGTACCAATCTTCCTCTTGCAGTGCAACCTCAACTGGTAAAACTGTTTGGGTTGCTAAGACTGGACAATACTTCGATATCAATATATATCGCCatagaaaataagaataatggTGATATGATTTTTAAACTTCAAGTTTCAATATCACTCAAAACTAGAGTTGTGTATTGACAAAAAAACTTGTTGATGTGATACATATCATAAGACAGGGATTATGGTTCAATTCTTTGAGATACAGTGAGATACTGTAAACAAGGTTAAttgttatccaatcagaacagtgcgATCTAAAGACACtgctgaaaaaatacaaaactgctGTCTTCTGTCAATCTTTATATGAACTAATAATTAACAATCAGTACTGTGAAAATCGGTACGATATAGTAAAATGCAgtaatattttcttacatacctataataataactaaGGAGCAGaatatctaatataaatatcatTACACACAGCAAGACTTACTCTATTGAACCAGTGCAATATCTGCAAACCTGTCATCAACAATAAGCAAGTAATCCAGCTTTGTTGACTTAGACCTAGACTGTTGGCTCTAGTGGCCTTAACTACAACGCTACTGGCAATGTCAGTATGATGCATGATGACATACATCACAGGCAATGGCTTTACACTGTTCATATCAATACctgaattatattgtatcaaccaaaattaagaaatatattgtgatatattttttggccatatcgttCAGTCCTACTTAAAGAAATAAGCTACTGAAAACCGCAACTGGGATCACTCAGATGTGAACACAAACTGATGCAATTTGGTCAAAAATAGGCCATGTTACAGTGCACCACTTctcaaagtaaacaaaaccagACAGGCAGGCAGTCCAAGCAAAGCGAGAAGCAAGGCTACTTCCAGACACAGGTTGCCATGGGCAACGGACAGGCAAAAAGCCCATCTGGTCAAAAAGCTGCAGGCCTGGTCTTTGTAACTGGGGCGCTATTTGAGATCATTGCATTCTAGAGGAACACAAGGCATCACAGGATTCTGTCAGCTCGTCTGGGGTTAATGCAGCGAATGCAGTGCAAAATGATGAGAAATGAAAGAACAAGAGGCCAGAACAGACATCATGTGATCATAATATGTTTGCAGATCTGTTTTGGGAATTCCCTGGACTggtggattattattattactactggaTAATGGATAATTGCTGGTCTGACAGTATTGGTGCAGtacagttgttttgttttttgtaatgcCAGTAAATGcaaaactttaaaagaaatataCCATACCACAGTACAGGGTGAGTCAAAAGTCTGAGAATacccttttatttcagaaatgaaaGGGAAAATGACATATCTGAATAACCCAGAAAATAATCATTAAGGTGGCCTATCTTTAAAGCTATTTCCGAAACATGGTCGGCATCTTAAAAGTTGCCAtatttcatttctgaaataAGGATAAGGGTGTCCTGCGACTTTCGACTCACCCTGTAGATCATGGTTATTAATGTAGCTCAAAAATCTGCATCCTTCCAACAAAAACAAGTGACTTAACTGCACAGCTTTAAACAGATTCAAGAGTATTTAAATCAGTTCATATAGGTTATCATGGCTTGGCTCCAATAAAATATGCTGTCCacttaaagttaaataaaatcctATTTATATTCCgttttcacacacaaaaataaatatgacagttttaaattatgtaacCATCACTGCCCACATAAGGTTATTATATGCATTCTTTACATAGGAATGGATGTTACGCAGAACATCCTTTAGTGGGCAGTACAGAGTCATTATTCTGAcattcacaaaaataaaaaacgtttCAACGGTTCAGGAGGACATGATAATAGATGTATTCCAAAATGAAGGCTGCAGTCTAGGTGGGCCACTATGTCAGGCTGTTCCAAAGTAGAGTGGAGTTGTATTAGGTGGAGAAATTTGAAGTTTGCAACCAATGTATACTTTACCCACAGTTCTCTACTCACATTTAACATAGaaaaattagagaaaaaaaattacccgaaactttaaaaatggaaaaaagactttttttttatattaatgtattttaacacaaattaatCATTGTACCAAGTTTGGCCCCAACTTTCTTctatgtttttattctttttacatAGAGAATAAAAAATTTGAGAAATacattagagaaaaaaaaaattacccgaAACTAAGATATGATGTTGCAATGAAGCCTTGTTCACCTGTTTCGTATCTGGATACTAAAACAGGATACAAAAAATTACTCTTTGTAGGACCATCTAACTATGCAACTATGAGTGCAGCTCATGCTTTGGAATACAGCTAATGTGTttagcacaaaaaaaagaggTATCAAAGGTGCAAACAGCTGTGTAAAATATTCAGAAAGGTCCATCTCTGCCAGAGTTCTTCTTCGTCATGCCCAAAATATCAGTGGTTGGGTTACGTTTTAACTGTTGGCTACACTGCCCCAGCAGTTTTCACTGATAATGCTTCATTGCATCCGTATCCATAAGCTGTGCACAAAAACGAATTAAATGAACAAAGAGTACTGTATtcatatttaacataaaaaattacCTTACAACATTTTAGAAGCTCTAGGTCTAGGTGAAGTTGGTCAAAGTTGTGctttccaaaaatatataacatccCAGTGTCGACTACAGGACGATGGGTTTCCATTCTCAGTCTTGAGTTTCTTGAGtagtttttttatcttaatctaAGTAAGTTTATCTTCCTTGCCACTCTAAATAAGAAGGTTCGAAGAtaggctgcacgatattggagaaaaaaactgacattgcaatagttttttttctgctgtaaatatTGGGATATAAACAAATATGGAAAAATTTACTCAAAAAGATCAAACCCAAAgtcaacagaagtcaatgatccaaggTCACAACATTATGATATTATTAATGCATTCTGAGTATTCAAtattggaataaaataaatgcctCTGATAGATTTACcatgaaaaataagaacagtgaGAATTTTCCTTTTGGATCAAGCATCAAAAATGttgcatttaattaaattacctTACATGACAATTGACCACTCCAACATTGCAGTGGCAATActaaaatgatatattgtgcCGCCCTAGTTATAAGTACCGTGTAATATTGCAGTATGAAGCTTCAGTTGCATTATGATGAATCATGTTTTGGAGCAGCATCAGACTTGCCCTAATCTGTTAGAAATGATTCAGATTTAATTTCAGCAAATGCTGTCAGTCAAGTTATATACTATTCAAGACTTACGCAAAGCATTAATAAAGATAATTACTCCCTCGGGCAGGAGTTATATGTGAAATTGATTTGCAGGTTTGCTAATTAGGTATAGACCAAGATGTTAACGCCACTGATTAAGGACTGATTTTGTTTGATTATGTGCAAAGGAAAAGGTACAATAATGCAGTGCCATTTTCTATAGACCACTGACTGAAACCCACTGCCAGTGTAAAGATGCATTTTATCATCAGTCATGTTATAAAGATCCAAACATCAGATATAAATTCAGTTTTAAAAGCTGAAACCGTAATGCATATGCCAAATATGATTATGAGTGCAAGTGTAAACCTTTGAAAAAAGTGGAAATATATAAAGATCTAACCATATTATGTAAATGCCTTCTTTACTAGTTCTAACAACGATCTCAAAACTATGGAACGAGAGGCTTTGAGAATATGTGATGCGATACAATCAAACGGCCGTTCATCATGTGATGAACATGAATGAAGACTGTCAGCACTGTTTGAAAGGACTGCTTACAGTAAGAAGGTGTTGAAGCTTTTGTTATTTCCTAAAGACAAGGGAAAAGTTTAAAGTGATCTCTACTAACACATAGAAAAAAGTGGGAGCTAGGTACCATTCTGGGATGAAGgactcttcctcctcttcctcttcctctggaTGTGTACGCACCAACATCAGAACTTCAGTGCTCCTGGTGGACTTCTCCCTTTCCGTGGTTCAATTTTACGCCCAAGTCTATGTTGCATTATCTGTGAAAAACACACTGCCTGAAAATGTGTGgatataagaaataataaaagtcactttaaaaatggaaaaaaaaa

Function

GO: NA

KEGG:

id description
K13701 ABHD8; abhydrolase domain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205172 lncRNA upstream 117126 12993364 ~ 12993598 (+) True G151410
TU205136 lncRNA upstream 297850 12777716 ~ 12812874 (+) True G151377
TU205104 lncRNA upstream 376457 12732022 ~ 12734267 (+) True G151347
TU205030 lncRNA upstream 503637 12544064 ~ 12607087 (+) True G151302
TU204988 lncRNA upstream 817203 12293082 ~ 12293521 (+) True G151272
TU205297 lncRNA downstream 82907 13214360 ~ 13214585 (+) True G151504
TU205300 lncRNA downstream 98687 13230140 ~ 13236737 (+) False LOC107197015
TU205301 lncRNA downstream 98687 13230140 ~ 13236737 (+) False LOC107197015
TU205311 lncRNA downstream 160878 13292331 ~ 13292685 (+) True G151517
TU205313 lncRNA downstream 163187 13294640 ~ 13296287 (+) True G151518
XM_007235559.3 mRNA upstream 1120 13103115 ~ 13109604 (+) True LOC103033117
XM_022678982.1 mRNA upstream 86155 13013783 ~ 13024569 (+) True napg
XM_022678970.1 mRNA upstream 234996 12848418 ~ 12875728 (+) True LOC107197877
XM_022678971.1 mRNA upstream 234996 12848418 ~ 12875728 (+) False LOC107197877
XM_022678961.1 mRNA upstream 588430 12295483 ~ 12522294 (+) True LOC103039850
XM_007235576.2 mRNA downstream 17656 13149109 ~ 13171989 (+) True LOC103038185
XM_022678984.1 mRNA downstream 45205 13176658 ~ 13181747 (+) True LOC103033765
XM_022678985.1 mRNA downstream 98649 13230102 ~ 13236725 (+) True LOC107197015
XM_022678987.1 mRNA downstream 126682 13258135 ~ 13265901 (+) True LOC111194542
XM_007235578.3 mRNA downstream 136335 13267788 ~ 13270876 (+) True LOC103039137
TU205216 other upstream 3209 13103145 ~ 13107515 (+) False LOC103033117
XR_002651134.1 other upstream 1506683 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 1549180 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 2369586 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 2484713 10622659 ~ 10626011 (+) False mau2
trnar-ccg_2 other downstream 144058 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 148399 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 149243 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 149701 13281154 ~ 13281226 (+) True trnar-ccg_5
trnar-ccg_6 other downstream 150176 13281629 ~ 13281701 (+) True trnar-ccg_6

Expression Profile