RNA id: TU205297


Basic Information

Item Value
RNA id TU205297
length 226
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G151504
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13214360 ~ 13214585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaccacaacacaacggaagtgagtcacaacacaacggaatcttcccgggggaccttaaaagatgctgtaccagctgtatacaaaggacaataagtggcaaacaagcttctgaaaagtaagttatgtttattacctgtgattaccacggttgtgtgcatattattaaaagttctgcttcacaaaacgccttgtttgccacttattgtcctttgtacacatagtgaag

Function

GO:

id name namespace
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205221 lncRNA upstream 82909 13101394 ~ 13131451 (+) False LOC103033441
TU205172 lncRNA upstream 220762 12993364 ~ 12993598 (+) True G151410
TU205136 lncRNA upstream 401486 12777716 ~ 12812874 (+) True G151377
TU205104 lncRNA upstream 480093 12732022 ~ 12734267 (+) True G151347
TU205030 lncRNA upstream 607273 12544064 ~ 12607087 (+) True G151302
TU205300 lncRNA downstream 15555 13230140 ~ 13236737 (+) False LOC107197015
TU205301 lncRNA downstream 15555 13230140 ~ 13236737 (+) False LOC107197015
TU205311 lncRNA downstream 77746 13292331 ~ 13292685 (+) True G151517
TU205313 lncRNA downstream 80055 13294640 ~ 13296287 (+) True G151518
TU205367 lncRNA downstream 160591 13375176 ~ 13375562 (+) True G151559
XM_022678984.1 mRNA upstream 32613 13176658 ~ 13181747 (+) True LOC103033765
XM_007235576.2 mRNA upstream 42371 13149109 ~ 13171989 (+) True LOC103038185
XM_007235560.3 mRNA upstream 82907 13110724 ~ 13131453 (+) True LOC103033441
XM_007235559.3 mRNA upstream 104756 13103115 ~ 13109604 (+) True LOC103033117
XM_022678982.1 mRNA upstream 189791 13013783 ~ 13024569 (+) True napg
XM_022678985.1 mRNA downstream 15517 13230102 ~ 13236725 (+) True LOC107197015
XM_022678987.1 mRNA downstream 43550 13258135 ~ 13265901 (+) True LOC111194542
XM_007235578.3 mRNA downstream 53203 13267788 ~ 13270876 (+) True LOC103039137
XM_022678988.1 mRNA downstream 83009 13297594 ~ 13335076 (+) True LOC103039742
XM_022678990.1 mRNA downstream 83009 13297594 ~ 13335076 (+) False LOC103039742
TU205216 other upstream 106845 13103145 ~ 13107515 (+) False LOC103033117
XR_002651134.1 other upstream 1610319 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 1652816 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 2473222 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 2588349 10622659 ~ 10626011 (+) False mau2
trnar-ccg_2 other downstream 60926 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 65267 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 66111 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 66569 13281154 ~ 13281226 (+) True trnar-ccg_5
trnar-ccg_6 other downstream 67044 13281629 ~ 13281701 (+) True trnar-ccg_6

Expression Profile