RNA id: XM_007230633.3


Basic Information

Item Value
RNA id XM_007230633.3
length 1958
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103046888
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7821981 ~ 7837425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGTGAGCGCGCCGTTAAGCAGGAGCGCTGACAGACGGAGCCGTTCGCGCGCTCGAGCGAGGAGGAATCTCCggttgtttataaaaatgcgGTCTAAGGGAGTGCTCCTGTTCCTGCTGCTGGGCGCGTTCACGGCTTACTACGTTTATATGCCCATTCCGGACAACATTGAGGAGAGATGGAAGCTCATGTTCACGGACTGCTTCTTCAGAAGTTTGAGCcacctgGCAGACTTTAGTGAGCTGTTGGGGCTGAAGGACTACATGGGGGTGATGATGTTCATCACGTTTGCGGAACAAGTGGTGCCTGTGTCTGATGAGCGGGTGCAGGTGTCAGAAGAGCTGTTTGATGgtgtggaggtggtggtgtATCAGCCCAGGCAGGAGAAAGGAGCTGGAGAGGCGAGGAGGGCCATCATCTATCTGCACGGGGGAGGATGGTGCCTGGGCAGCTCCAGAATGGGACCTTATGATCTTATGGCCAGACAGATGGTTACAGAGCTCAATGCGGTTGTTGTTTCTGTAGAGTACCGCCTGGCCCCAGCTCATCGATTTCCTGCCCCGTTTGAGGACGTGTACCGTGTCGTCAAGTACTTGTTCCAGCCGGACGTCCTGGAAAGGTACAAAGTGGACCGAGAGCGGGTGGCCGTGTCTGGGGACAGTGCAGGAGGAAACCTGGCGGCTGCAGTGACCCAGCAGTTGCAGTTGGAACCAGAGAACTCTATAAAGCTGAAGGTGCAGGCCTTGCTCTACCCAGTCCTGCAGGCCGTGGACCTCTACACGCCATCCTACCAGCAGAACCAGAACATGCCCATCCTGCCGCGCACGCTCATGGTGCGCTTCTGGAGCGAGTACTTCTCCAGTGATAAGTCTCTCTTCAGGGCCATGATGGCCAACGACCACAACGGCCCCGAATCTGCCGCAATGCTCAAGTTTGTTAACTGGAGCGCTTTCCTGCCCGAGTCGTATCGCCGGGCGTACAATTACAGCGCGCCTCCTGTAGCGCAGACTGAAACAGACCAGCACTCCAACGAGCCAGCTCGCTCCCTCGTAGACCCGCGGGCCTCACCCCTGTTGGTACCCGATGAAGTGCTGCGTCCGCTGCCCAAGGCCTACGTGCTGACGTGTGAATACGACGTGCTGCGGGACGACGGCGTGATGTACGTCACGCGCTTGCGTCAGGCCGGGGTGGACGTGACGCACGAACATTACCCAGCAGGGTTCCACGGCGCCATTATGCTCACTGTGTGGCCCACTGACTTTGAAATTGCACGAAGGATGGTGGACAACTATATACAGTGGCTCAAGCTAAATTTGTAAACTTTACGATTTGAGTGCTGTGATTGTACCAAATTTGCGAATGACACAACTTGGCAAAGTTTTATGACTATTgtgaattatatattttgcaaAATTAAGTAAGTTATTTAAACAATAGCTTTACATTCCTTCTCTCAGACGTCATCTGGGCACCAGGCTGTGGTTAGATGTTCAACATTGCTTTTgtaatgtaaccaaatgtattatatgtgtttgtttcatgctgtttacatgctgTTTAGCTGCTGCTGACTCTTCTTTGGgggtattttgttttcttttttttaaagggcacAGTTTTTGAGTTTTTCTTGCTTCATCCTGGATATAGAGTAGTCTCTTCACTGctgactctttttttattttctcaagtCTTAATATTCTTAATATTCTCATGACCTGGattcaacaaaaacaaaactccCTATTTCTACTTCTCTATGTGATGCCCTATCTATGTGTACCAGTCTGTTAATAACTTTGCTAATCTTGCCAGTTTTTTATCCTTTCCTGAAATGACAGAGGAATCGACCATTTTTTCTACAGTACTGTTAATCACATTTGTGTTATCACtctgtatgaatgaatgtaCTTGATAGGATTCAGTTTGACAAGCAGTAAAAAGTCAACTGAAGGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0052689 carboxylic ester hydrolase activity molecular_function

KEGG:

id description
K13616 AADAC; arylacetamide deacetylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203307 lncRNA upstream 14810 7806866 ~ 7807171 (+) True G150104
TU203263 lncRNA upstream 81893 7679668 ~ 7740088 (+) True G150069
TU203259 lncRNA upstream 162303 7654428 ~ 7659678 (+) True G150065
TU203253 lncRNA upstream 174095 7647623 ~ 7647886 (+) True G150060
TU203196 lncRNA upstream 438003 7374013 ~ 7383978 (+) True G150015
XR_002651110.1 lncRNA downstream 28685 7866110 ~ 7873133 (+) True LOC111194509
TU203342 lncRNA downstream 38770 7876195 ~ 7877950 (+) True G150132
TU203419 lncRNA downstream 131352 7968777 ~ 7969064 (+) True G150203
TU203412 lncRNA downstream 143669 7981094 ~ 7981400 (+) True G150196
TU203459 lncRNA downstream 291041 8128466 ~ 8128760 (+) True G150235
XM_022678808.1 mRNA upstream 194441 7620597 ~ 7627540 (+) True neu4
XM_022678805.1 mRNA upstream 210370 7606489 ~ 7611611 (+) True srprb
XM_022678801.1 mRNA upstream 281845 7517004 ~ 7540136 (+) False LOC103022780
XM_022678815.1 mRNA downstream 154069 7991494 ~ 8017086 (+) True ap1m1
XM_022678816.1 mRNA downstream 156078 7993503 ~ 8017086 (+) False ap1m1
XM_007239950.3 mRNA downstream 338684 8176109 ~ 8179619 (+) True LOC103039989
XM_022678577.1 mRNA downstream 460819 8298244 ~ 8299583 (+) True LOC111194453
XM_022678824.1 mRNA downstream 491873 8329298 ~ 8357694 (+) True LOC111194511
TU203302 other upstream 16727 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 570615 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 874045 6943665 ~ 6947936 (+) False G149984
trnat-agu_11 other upstream 1083947 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 1086813 6735095 ~ 6735168 (+) True trnat-agu_10
TU203337 other downstream 37215 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 811405 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 1718234 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 2013793 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 2304699 10142124 ~ 10151893 (+) False LOC103031168

Expression Profile