RNA id: XM_007232766.2


Basic Information

Item Value
RNA id XM_007232766.2
length 1124
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103031003
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1956162 ~ 1960545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTGCGGCGCGTGCTCGCGGCATTAGAGCGCTTACAGCCAGCAGCGGAAAAAAGGACAtataagaaattaaatatttattattttttaggggAACGTTCTCCTTTTTCTTCACTAATCCTATTTTAAAAATGGCAGACACAAAAGTGGATTCCGCCACGGAAATCTCCGCCAAGGACTTGAAGGAGAAGAAGCTCCTGGAAGAGAAGGAAAATGGAAAGGAGGCTGCTAATGGAAAgGAAAACGAGGAGAACGGAGAGCCAGAGAtcgatgaggaagaggaggatgaagtagatgaggaagatgaggaggatgatggagaagGTGATGAAGACGAagatgaggaggatgatgatgagctTGGAGGAGGAACGAAACGAGGggctgatgatgatgacgagGATGATGAGGATGAGGTGGACCCCAAGAAGCAGAAGACGGACGACGACGATTAAAGGATTGTTCCCTGCTGCTTATCCTCAGCACGGTGTTGGATGCCAGTGGCATAAAGGACTCGAACATAAACATGGTCatttttttctccccagttcACCGCCCGCgttcaaccaaccaactaaccccCCAAAATGCAAAATTTTCTAGAGGGAACACCACCCAGCGCCCAAGATCTCCCACCATTCTCAAAACTCAACTCAAAAAAACGACAAAATACACAAGACGAgggtttgtttgtatttttatttacattttatatttttgtacatattgTTGAGAGATCAGTCACTTTATCATGATCTCCTGTGACCAAAACGGTGCTTCTTTATGGAAATTTTACTTGTCTGACCATGTCTCGGATCTTCAACTGAAACggataaaaaaaggaaacgtgtataaaaaagaaaaaaatcagccATTTAACTCAGAGCATTCCAGTAAAAGTTTTATGTATGAACTTTAGTTGTACCATAACTAGTTGTACCATAAactagttttttgtttgttttttttttgttctttttttgttttgttttgtatggGAGGGCTAGGCCAAAGAAAAGGAGTTACTTTTCTTTCTGATTTATTTTGTCTGCATATGTTTTACCTTggcctgtttgtgtgtgtgaagtttGTTGTTCAACAATAAacctgacttttattttgtga

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko05200 Pathways in cancer
ko05217 Basal cell carcinoma
ko05224 Breast cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201054 lncRNA upstream 153857 1797408 ~ 1802305 (+) True G148546
TU201035 lncRNA upstream 243706 1697084 ~ 1712456 (+) True G148531
TU201027 lncRNA upstream 267701 1683458 ~ 1688461 (+) True G148523
TU201025 lncRNA upstream 321405 1633060 ~ 1634757 (+) True G148521
TU201007 lncRNA upstream 366554 1589157 ~ 1589608 (+) True G148507
XR_002651075.1 lncRNA downstream 23068 1983613 ~ 1989391 (+) True LOC111194451
XR_002651076.1 lncRNA downstream 23082 1983627 ~ 1989391 (+) False LOC111194451
TU201079 lncRNA downstream 30019 1990564 ~ 1990776 (+) True G148565
TU201080 lncRNA downstream 36746 1997291 ~ 1997591 (+) True G148566
TU201106 lncRNA downstream 102689 2063234 ~ 2063906 (+) False LOC103032064
XM_022678653.1 mRNA upstream 53708 1897473 ~ 1902454 (+) True LOC111194472
XM_022678652.1 mRNA upstream 69581 1867123 ~ 1886581 (+) True LOC103035142
XM_022678646.1 mRNA upstream 284920 1639309 ~ 1671242 (+) True LOC103034819
XM_022678655.1 mRNA downstream 43054 2003599 ~ 2193725 (+) True LOC103032064
XM_022678658.1 mRNA downstream 43054 2003599 ~ 2193725 (+) False LOC103032064
XM_022678656.1 mRNA downstream 43055 2003600 ~ 2193725 (+) False LOC103032064
XM_022678657.1 mRNA downstream 43055 2003600 ~ 2193725 (+) False LOC103032064
XM_022678662.1 mRNA downstream 43055 2003600 ~ 2193725 (+) False LOC103032064
TU200917 other upstream 750762 1200285 ~ 1205400 (+) True G148442
TU201123 other downstream 152128 2112673 ~ 2114465 (+) True G148599
TU202027 other downstream 2044373 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 2166404 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 2198655 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2331938 4292483 ~ 4386634 (+) False LOC111194484

Expression Profile