RNA id: XM_007235576.2


Basic Information

Item Value
RNA id XM_007235576.2
length 4413
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC103038185
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 13149109 ~ 13171989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGGGAAGTGCCAGGACCCTGCCACATGTGATTAGTGAAACAACGGTAATCTGAGCTAGTGTGTGATCACTAGCTCCGTCTGAGGAGGAGCCTCAAACacagggaggagagagagggagagagggaaagagagaacgagagagagagagcaaccaGGAGGTGTGTACACATGCATACACTCAGCCTGTCCTTAAACTCTAGACACACTCAGATATTCACAGACGCTCAGACCTTGCCATGTAAACGTATCCACCATGCAAGAGGAGATGCTATCAGGACGTGGACAGACAGTGACAGACGTTTAAAACTCTTAAGGCAGAGAACAATTGTCATTTACCAAGAAGTATTGTGTTTTACACAAGTACCACTCATGATTTGCTAGACCTGGACTTGCCTACTGTCCTATACTACAGGATGAGGATACACCATCAAGCCTACCTCCAGGGTATTTTGACTGCAAGTCAAATATGCAAGTAATGTAGATGCTGAGCAACAACCTGAAATCAACCTGAAACAACTATGACGAGGAACTACCAGTTTTAAATCGTGACGACTGCCCACTCAGGTGCACCTGAAGAAACGCCAACCCAGTGCAACTGAGTCCGTGTCAATTCCAGCCCAGCTTAGCAGGAGGTTCTCCAGTGCCCCTCCCTCAATACATGGATGTACGAGTCACAGGGGGAGCACAATCTGTCGTCCCCATTCCTGGCTACCAGTGCAAAATGAGGGATTTCCCCTCCCCACCTCTACCCTGAGGTCATCCCAACACAACGCCACCCAGATAAGTCCGACTTAGCCGGGCGCTCGAGTTTCAATGCTCCACACCATTCTAAAATGAAGTTATGGAAAGGGGCCATTCTTGCCTTAATCCTCATTAGCACTGCTCTTTCACTCCTCCTCACCAAAACCATGCTGCCTGCCGGGGCCACCGACCCCAGGGCCTCTGCCTCGTCCACGCGACTTTCATCAGCGACACCACCATTAGGACCACCACCGTCACCATCATTTTCACCCGAAGCGACGGGTCTTCGGCGGGTGGCTAGATCAGCGGACAGCGTGGGCTCTCTGCTATCACAGTTTTCCTACTTGTTCCAGAGCTTCACAGAGGGGGAGCTGCAGAGGGTGATCAGAATGCTGGTGAACAGACAGTCCAAAAGGTCAAGCAAGGTGGTGGCAAGTAGCCGGGGCAGGAGAACCAAGCGGGCAAGGATGGGCCCAAACCAATGCAAGTTGCACAAGAAGCAGCTGAGGGTAAGTGACCTGGGCCTGGGCTACGACAGTAATGAGACTGTGGTCTTCCAATACTGCAGCGGCAAATGTACTAGCCGCCGGGGCACCTATGACATAGTGATGGACCACTTGCGGCTCAACAAGTCATCTGGTCAGAAGCGCAAAGCTTCAAACGTGGAAGGTGCCAGGGACCGTGAACCCTACAGCCCCTGCTGCCGGCCCACTAAGTATGAGGGAAACTTGGTGTTCTTTGGCAACAACGGAAAATTTGGCATTGTCCCGAATGTGTCAGCCAGGGAGTGCGGCTGTGTATGACCTCAGAAAACAGCGAAATGGAGGATGTCTGAGTTGCAGTTGAGGCTTCAGAGTGGGTGGTGGCAAGAGCAGCTATAGTAGAGGCCGTGGAAGTCTTTGGACAAGCTCATTGTGGTCTACAGTCACCTCCATGGAAATGATGGAAGCTTCAGAAGATACAGGATGTCTACAGTCATCTCTGTGCAAATAGTGGAAGCTTCATAGGGGTTTCAGTCAACCCAACAGTCAAAGCCCCGGAGATGCCACTGTCAACGCTGTAAAAGATACAGAGATGCAACTGCAAATGCTACTGTAGTGACGGGTCCAGGAAGGCTACAGTCTACTCAGTCAAGCTTCTCAGCGGTTTCAGTCAACAACGTAACAGTCAAAACCTCCAAGACAGTACTGTGAAGGATTCCACAATGAGGAAGCTACAGTCAACTCCGTCAGGCTGGTTCCAGTCAGCATTATGGTAACAGTGACGCTTACTCCCATATGCTTGGAAACGTACGtgaaaaacgaattctgtgtgTGTCATAATGGAAACCACAGAAGCCACAGCAGACAGGAAGGCTATGTCTGACACTCAGGCGGAACGGGATGGTTTGTAGACAGCTGGAAATTTGTGATTACTCTTGCTTTCTGGTTCACGTGCTTCATGGATCAATGGAGAACATGGTTCTAAGAAGAtctaaagaggaaaaaaaacaaaaacaatcttGTGATGGGACCTGTAGTGCAAGCTTTCAGTGCTGAGACACTACTCTTGCCTTTCACTGAACACAAAATTGCTGGGTGACAAATGCAATTTTAAGGAGAACTTCACGTCAGTCTAAATGAACAGAGATTTTACAGTTCAGAAGAAATTCTAAAGTATACAGTCTTTTGTCATGAATGCTATGTGTATACTGAAGTAAGATGTTAAACACAGCTACCTCATTTACTTTGTGTAAGAAAAATTAACATGCAATGAATCTAGCTGCGCTACACCCATTCTCCTGGGGCTGACTATTCACTGAtagaaatcacacacacaaacacaagaacagatacacacaaacacatttacttAAACCCCTTTGTGTCTTCTCAGGTCATAACCTCTAAATAACAACCTGCATTGTCACTTGAAGAGAACCCCCATTTATTATAATAGCTGCTTTTATTTTCACTATAAAGCCTTGCCAAATCTGTCCAATAGAACCATACATAGAACTAAAAATCAGACATAATCACTTAACATTTTAATCTCTGCAGAAAGATCAAAGAATTTGTTTCTTTAACCCTATCCTAACTATGATTTGTCCTCTATTAGTCCTGAGTGTTTTTACAGTAGGCTGTAACAGTAACGTAAGAACACCTGCTGAGATTGTACAGCACAAACATGCATTTGCAGAGTGTCAACCCCGTGTTGGCATTCGCTTTCCCATTAGAGATTATTCAAAATTAACCTGTTTGGCTGAAGCTGAAAtcgaacaaaataaaatatttgactgGAAGAATTTTCCAGcaagatataataaaattgaTACACCTGTGCATACGAACTGCATGTCTTGTGCAAGTTTTGCGCCTTAAGAGCAACTCCCAGGTGTTAGAAAATACTAAAAGACAGTGAGCAAAGGAGTACATCTAAATATAATCAGgtacatgtattttaaattcTGCTTTCCTACACTCAGATCTTGGTGCCAGAATGTAGGAAAGGCCTATAGCTTCTTTTTAAAGATTGACTTACACAACAATCTGTTTGCTCACGATTCTTAAAGATTACCACAGTACATCCAAGAGAACAATCTGTTGTGAGTCAGACAGTGGCAGGACAGACGCGTGCATATTGGGTTGTCCCAGATCTGTAACCCACTGCACATACTGTTAACATCTAATTCCTCCTAAGTCAACAGAGCTATAAATAGACAAATCTCTACTACACAGAACAGTTAGATAACACTTGTGTCCACTGATTTTCCTAGTTTTGTCAAGCTGACTTGTTCGCCGCAAACAGGTGGGCAGGTGGGCAGGTGGGCAGGGGGGCAGTCTGGGCTGCCAAGGAGGTTGCGGAACTGTGGTCAAATTGAATAACGAGAACTTTAAGGTAATTAAGAACAAAACCACAAATGAGATTGGAGGCAGGCCGGGAACCATCAAGGCCTAAACATGGCCGGCCTTCAAAGATAATGGACTTACAGTAAAAACaaggcagcagcagctgagTGGACACGCAGCCTCCAGCCCACACCAGGGCCTGGCCGCCAGATTTACCTACAGGACAACAAACAGACCAGACCAGATTGAGAACCACTGTACACACATAGGCTTCAGATGGtaggaaaaaacacatttatcgAACGCTGGGCTGTCTTCAAAGTTCTTCAGCATGAGCCAGAAGCAGCATATAAATCTGCTAATTGGATATTCTTGAAAGAGATTTTCCTGAGCAGGCGTCCGTGCGGATTATATTAGCCACTTAAAAAACTGTTACAATTCTTCTTgaaatttatttgatttgtatttctcGGAAAATCGAAGGAATATAACAAAGTGTGTGATGCAATCAGATCATGctgcaaaatatatttatgcacACATCAATTgaacactttattggaaacacttcatatgtaattcataaaaactaataattagtcattaaataatttatcCAATCAGCCAATCTACCACAATATTGTGCATAAAAAATACCAAAACGCTGCATAGTAAACGCAAAATGATTATAATGATATTATCATCTACTACATGAtatggcatatatatatatataagaattaaAGATGTTCTGAGAGCAAAAGCAGCCAGTATTTTTATGGTGTTCCTCATAAAGTGTTCAgtgggtgtgtatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205221 lncRNA upstream 17658 13101394 ~ 13131451 (+) False LOC103033441
TU205172 lncRNA upstream 155511 12993364 ~ 12993598 (+) True G151410
TU205136 lncRNA upstream 336235 12777716 ~ 12812874 (+) True G151377
TU205104 lncRNA upstream 414842 12732022 ~ 12734267 (+) True G151347
TU205030 lncRNA upstream 542022 12544064 ~ 12607087 (+) True G151302
TU205297 lncRNA downstream 42371 13214360 ~ 13214585 (+) True G151504
TU205300 lncRNA downstream 58151 13230140 ~ 13236737 (+) False LOC107197015
TU205301 lncRNA downstream 58151 13230140 ~ 13236737 (+) False LOC107197015
TU205311 lncRNA downstream 120342 13292331 ~ 13292685 (+) True G151517
TU205313 lncRNA downstream 122651 13294640 ~ 13296287 (+) True G151518
XM_007235560.3 mRNA upstream 17656 13110724 ~ 13131453 (+) True LOC103033441
XM_007235559.3 mRNA upstream 39505 13103115 ~ 13109604 (+) True LOC103033117
XM_022678982.1 mRNA upstream 124540 13013783 ~ 13024569 (+) True napg
XM_022678970.1 mRNA upstream 273381 12848418 ~ 12875728 (+) True LOC107197877
XM_022678971.1 mRNA upstream 273381 12848418 ~ 12875728 (+) False LOC107197877
XM_022678984.1 mRNA downstream 4669 13176658 ~ 13181747 (+) True LOC103033765
XM_022678985.1 mRNA downstream 58113 13230102 ~ 13236725 (+) True LOC107197015
XM_022678987.1 mRNA downstream 86146 13258135 ~ 13265901 (+) True LOC111194542
XM_007235578.3 mRNA downstream 95799 13267788 ~ 13270876 (+) True LOC103039137
XM_022678988.1 mRNA downstream 125605 13297594 ~ 13335076 (+) True LOC103039742
TU205216 other upstream 41594 13103145 ~ 13107515 (+) False LOC103033117
XR_002651134.1 other upstream 1545068 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 1587565 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 2407971 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 2523098 10622659 ~ 10626011 (+) False mau2
trnar-ccg_2 other downstream 103522 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 107863 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 108707 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 109165 13281154 ~ 13281226 (+) True trnar-ccg_5
trnar-ccg_6 other downstream 109640 13281629 ~ 13281701 (+) True trnar-ccg_6

Expression Profile