RNA id: XM_007241591.3


Basic Information

Item Value
RNA id XM_007241591.3
length 4459
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC103025670
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9873966 ~ 9882127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCCACTCGACCAGCAGCACATCGAGTACCACACAGACCCCCATGCGGATGAGGTTTCAGCTGCAGTCTGAATAATGAAAGcCTTCAGCCTGAAAAGCCTTCTTCATCCCTAGACCAAATCTACATTCACCTTCAAATAAATCTAAAGACATGGCAGAACAACAAGAGTATCTGGTGGACGGAAGCCCTCTCATCACCGCAGCCCAGCTAGGCAAGCTTCGCCTGGTCAGACTGCTGGTGGAAGGAGGCGCTCAGGTCAATGAACGCAACCAGCGAGGAGAGACCCCACTGCTGGCCACATGTCGGGCTATGAGGGGTGACCAATCCGGAAGCACCATGCTGAGGCTAATCCGCTTCCTCATTAAGAACCAGGCGGACCCCAACATCCAGGACAAGGCTGGCAGGACTGCCCTCATGTATGCCTGCATGGAAAGGGCTGGTCCTGAAGTGGCTTCTGCCCTAATTTCTGCAGGTGCTGATCCAAGCATGGAGGACTATGCCGGAGCATCAGCTCTAGTTTATGCCATCAATTCCCAAGACCAGGACACCATACAGGTTCTACTGGATGCCTGCAGAGCCAAGGGCCGTGACATCATCATCATTGCTACTGACCTAAGCTCAGATGGAGCCACTGTGACCCGCCGTTACCTGAATGTGCCTCCATCGCCCAACACCTCGCCCGTCTCCTGCATGTCCCCCTCTGACATCGAGCTGAAAACGAGCTCCCCGAGCTCTGAGGCTGAGGGAGAAAACATCTTTAACTTCAGAGCTTCAGGGAAGAGAGGAAGCAGGGTGGGCTCACCTCTACCTCAGGACACGACAAATCGCCAAAGGCTGCATTCTGAGCCTTGGCTGGCCATCCACAACTTGGCCCATCTGAGCCGCACCTACGAGGAAACCACGGGGCAAAGGAATGTgcaagaagaagaggaggtGGCAGGGAACAAGTACGTTGTTCAGCAAGTGGACCCGAGTGGTGGTCCCTGTTCCTCAAAGACTACAGGACACAAATCGAGCAGTGGGCTAGTGGTGCCTCGAAACCATGTGGTCCAGAAGCAGAAACTGGAGTGTCCATCCAGTTTGGAACATCTTCAGAGTCGAAGGAACACTCTACCTGCTCTAAATGGACAAAATTTGCTTAATTTGCCCACCCTTTCCTTTGGTCTTTCAAACTCTGACACTCGCTTAAATGACCAGCCCACCACTCTAACCCTTCCCCCGGTTCCTATCAACAGAAACCTCCACCATACCTCCTGTAGTAGCTCCAGCTCCCTATCTCTGGCACCCCCTGTTTCTCCACGTGAGTACAACACCATGAAGAAGTGGAGGCCTCAAGAGCAGTTGAGTCTGAGGACACAGGTACGTGGTGGTAACTTCCTGCCTCCTCTACCTTCAAACCCTTCCACACGTTTCTGCTCCGGAGAGCCAAGTCCCACACCTAGAGCCGAAGAGACACAGTCCGTCAGACAGGACGGTTCAAGGAGCCGAAGACCTCCACGTCGCCACTCAGTTCAGCTGGAACAAATGAAGCAGGAAGGCAGCACTGAGGAGATCCTCTTCGTCTTTTGAAACGGGAAGGTCAAAAGGACTTCCAACTTCCATGTGTTTCACAACAGTGTGAAAACATCTTAAAATGTCTTGAGACTTGAGACTGGTTTGATAACCAATGCTCTTTAATAGGGAttgtcagttcagttcagttcagttcaggtcAGGTCAGTTCCTGGAAGCCCACATTTCAAGATGGTTTCGATGCCCAGAGCCTGATTCCTTTCATTAGGGCTCATCATAACACATCTTCCACTTAAGATGAGCATGACTGAAAACCATTgagaatttttctttttctaaaaattgtttttttcccactgTTTCCACCATTGATGCGATTAGTTTTGGACTTGATTGCAGACCAAAGCAATCACACTAAGACCCTTAAAAGGAGAAGCTTTCGTTCTGGTCTCAAACAAACTCTGAATCGGTTAATTTTTAGTAAGAATATGATCAGACTGTGATCCGCCACAACCATCAGCTGTACACCTTTATGGTATATTTGTAGTCCTTCTTacactacaaaaaaacaaaatcttagcaagtgaaaatATCTAATGTCAAGGCAACAAatcttatatttgttttaataaatattgtaagtgttcgattattttgcttattgaatataataaagaatgaacaatttaattaattgtcACTTTATGAACCATTCAACCATtttaaaaactcaaaataagcactgGTCAAGCTATTCTCATTCTTGTGTCCAGATTTAagccaaaaaatctaaaaaataaataaataaataaacccgtATTAACACTGACTGCCTTAAAAACtgacttttttattacattttgccAATTACTGTAAAGACTCcataaagtaatgaaacattaaaTGGCACTTTTCTGCTGGATGGTACCAACACTACTGTACTTGACtctattttagcattttttgcaATTTGCAATAGTAAATCTCTGGGAACTGTTACTGAGAACTGGGTGCTTTTTTTAGTACTTGCTTTTTTGTGGCTTCAGGTAAACCATGTAGGGACTAAAATATGAGGTGTAATCCTTGAAGAACGCTGCCTAGCCAGAAATAATTATCACTCTATGTGATGAATGAggcaacaagaaaaaaaaaggtggaaCACACTCCCTTTAGCAGGAGGGTGTCGCGGTAGTGGGAACCAAACAGGTACCTTGAAGTGAGTCAAATCCATGAGTGTAGGTACCATGTAGGTGCCATTGATTAGGGAAAAGTGCCATATAAAGCTTTAGGTTGAGTAGTTTACCCAGGTAAATAATAAGCAGTTTATGACATATTTCTAATTGAAGACAGAAAAgataaaaaggcttttttttacactttaagaTAAGAGCTCAATTGACAacaaattaaaaagataaagaaataaaccacAGGGGCCTCAATACTTATTAGAAGACTCTTTATTGTATGAACTTATTCtattaaataatattgaatGAATGACAACAATGAAGCTGGTGGAAATTTCCGTTTGGCATGTAGCAGTTGCTCTTATGTAACCATGACTCAGAGGTAGGCCATCGTTGTAGGAAGAGCTTTGCTCAAGGACTCCAACCTGGGCACTTTTCCAAGCAGAGTTTCCCAACTTCTACCTCCAGGAGAGCAGCAATGTCACCCTCTATGCCATATACATGTACGGCATGTACCTTGTAACATGTTAACCAATGGAATGAAATGTTGGAAgtaagaaaaacactttttctaacaaactgaatttaaaaaaaaaacgttcttgGTTGCATCAATGCTCACTGTCATTCACTTTTCCCTCCTGGAGTCAAAATGAGTCCTTTTTTAATACACGATAACGTTTACAATGGAgagaaataatgtaatataaacaagaaataaaacatctcAGTTCTGCAGTATCAGTACCTGCTTCTATATCTCTTATACATGCATTCCCAGAGGTCACTGTGGAGTCATATGCACCAAATAACCGGCAATATTCCTGAAATTGTTccctttaacaaaaaataaaaataaaaaaagaactccCTTATAGCAGAAGCCAGCCATTGGAAAGCTGCATACTATATACACAGATCAGCCATATCATTAGCACTACATACCACCTACAACACAGCCCTACATTTGATGATGATATGTTGAACCAATACACTAGTTAGCAGCAGATGCTTCAAGTTCtgtaatgccaggttcacactacacaatttaaatgtttttatttttcagtcacTGACAATTTTTCTCCAATTTTACTCCAATTGGGGATCTCTTAAAATACGTTTGCCGATCGGTAGACGAGTGATCGCCGGCAAGTCGCAGATGCctggcaaatatttggcatgctaaATATCTGATCCAGTCGGCGACTGAGAGACAGGAGCAGTGGCTACCTACAGCCATCTCCTGCAtgaccagagctgtttatagagGGCCTGACTacagtttagattctctgcccgaacctgaCCCAACCAGAGGCCCAGGTCAGGTTGGGCTCAGGAAAATAGTCTGTGACCTAGGCATCTGTATTTAATGCtcgatttattttatataaagctatggcatgataatcacaatatagcaaagtaataaatcgaactgtttttaaataaaagttgcacaagttagaatgttataattatGCAGCTCTGGGGCTCACGCACACCTGAGCTTCTTCTTTGCTTGTCCACTATTGATTGCAGCACTGTACGTTGCTTTCCCTAAaaaataggtctatgcttcttcagtgttgcaatgttaattaacataattctgaacaaATTTCGCTCATTGaaacagcccgaaaatgttttttaaaagctctgttttaaactctacttattaaaaaaatgtctgctTTAAACGATTATGTAACATCATGTCTCCGGTAATGAAACATATGATATAGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204045 lncRNA upstream 2350 9869699 ~ 9871616 (+) True G150681
TU204034 lncRNA upstream 16811 9855134 ~ 9857155 (+) True G150673
TU204032 lncRNA upstream 53175 9820586 ~ 9820791 (+) True G150671
TU204028 lncRNA upstream 83371 9787468 ~ 9790595 (+) True G150669
TU204029 lncRNA upstream 83371 9787468 ~ 9790595 (+) False G150669
TU204069 lncRNA downstream 73339 9955466 ~ 10016966 (+) True G150704
TU204070 lncRNA downstream 108347 9990474 ~ 9998264 (+) True G150705
TU204072 lncRNA downstream 108347 9990474 ~ 9998264 (+) False G150705
TU204063 lncRNA downstream 128123 10010250 ~ 10032076 (+) True G150698
TU204077 lncRNA downstream 133084 10015211 ~ 10024979 (+) True G150709
XM_022678871.1 mRNA upstream 36711 9830103 ~ 9837255 (+) True plekhj1
XM_022678868.1 mRNA upstream 54796 9809326 ~ 9819170 (+) True LOC111194519
XM_022678866.1 mRNA upstream 289957 9525333 ~ 9584009 (+) True LOC103028184
XM_022678858.1 mRNA upstream 514009 9278465 ~ 9359957 (+) True LOC103031140
XM_022678857.1 mRNA upstream 619849 9234681 ~ 9254117 (+) True eef2
XM_022678876.1 mRNA downstream 17201 9899328 ~ 9926814 (+) True LOC111194523
XM_022678875.1 mRNA downstream 17201 9899328 ~ 9904999 (+) False LOC111194523
XM_022679372.1 mRNA downstream 34327 9916454 ~ 9917473 (+) True LOC111194611
XM_022678892.1 mRNA downstream 160599 10042726 ~ 10049750 (+) True LOC103032638
XM_022678893.1 mRNA downstream 169193 10051320 ~ 10054422 (+) True LOC111194527
TU204035 other upstream 21112 9851218 ~ 9852854 (+) True G150674
TU203913 other upstream 306869 9555659 ~ 9567097 (+) True G150579
TU203562 other upstream 1217258 8648830 ~ 8656708 (+) True G150321
TU203337 other upstream 1994665 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 2068712 7769684 ~ 7805254 (+) True G150099
XR_002651121.1 other downstream 259997 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 259997 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other downstream 259997 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other downstream 259997 10142124 ~ 10148318 (+) False LOC103031168
TU204186 other downstream 527666 10409793 ~ 10442243 (+) False LOC111194616

Expression Profile