RNA id: XM_007258396.3


Basic Information

Item Value
RNA id XM_007258396.3
length 4187
RNA type mRNA
GC content 0.48
exon number 24
gene id smc4
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6699726 ~ 6725345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagACGGTATTAGCTGTACAGCTGAACATCTGAACACGACAATTGGCACAGTCCGCACTTTTCTGTTTGAATTTGGGCACTGAAGTCGGCGCAGGCTCCCATGATGCCTTGCGCGGGTTTGTAACGAATTTAGGCGCCATTTTCAAGTTGGATTTTCCTCATCACAGCGAAAATAAACGGGCTCGGATTtatgctatttttatatttaaaaattacaaacgCGTTTTTAGGGAGTCGACACGTTTGGGTTACATAGGAGAGCGTTTTCAAACCTGAGAGATTTTAGCCAATCATGCCAGGAAAAACGACCAAGTCCTCCACTGCTGCTAAACGAGGAAAAGGGTCTAAGGATGACTCTGACGAGGAGATACACCAAGCCCCCACTAAAGAAGCTCGCTCGGGTGACCAAGACCTGCCACCAGCACCCAACACTAATGATGCAGCTCCCGGGGAGCCTGCCGAGGCAGTGGTGGATAATCGAAGTTTGGAGGAGATCCTCGGTAGCATCCCTCCACCCCCGCCCCCAGCGATGACCAATGAACCGGGCGCTCCTCGTCTGATGATCACTCACATCGTCAATCGCAATTTTAAATCATACGCTGGGGAGCAGATTCTGGGACCTTTCCACAAGCGGTTTTCCTGTATTATTGGTCCAAACGGCAGTGGAAAGTCCAATGTGATCGACTCCATGCTCTTTGTGTTTGGATACAGAGCTCAAAAAATCCGATCCAAAAAGCTGTCTGTCCTTATTCACAGTTCTGATGAGCACAAGGACATTCAGAGCTGCACTGTAGAGGTGCACTTCCAGAAGATTGTTGataagGAAGGAGATGACTACGATGTCATCCCCAACAGCAAGTTCCATGTTTCAAGAACAGCCGGTAAAGATAATTCCTCAGCCTACCACATCAATGGCAAAAAGGCCACTTTTAAAGATGTTGGGACAGTGCTTCGTAGCCATGGCATTGACCTTGACCACAACAGATTTCTTATTCTAcagGGGGAAGTGGAGCAGATTGCTATGATGAAGCCTAAAGGCCAGACAGAGCATGACGAAGGTATGCTGGAATACCTTGAGGACATTATTGGCTCCTGCCGACTCAAAGAGCCTATCAACACTTTGTGCAGACGAGTGGAGCTACTCAATGAACAGAGAGGAGAAAAGCTGAATCGTGTGAAGATGGTGGAGAAGGATAAAAATGCCCTGGAGGGTGAGAAGAACAAAGCGGTAGAGTTTCTCACTTTGGAAAATGACATGTTCAAGAAGAGGAGCCAACTCTGCCAGTTCTATGTGCATGATTTGCAGCAGCGTGTGGCTGAAAAGGAAGCAGAGAAACAGCAGATCCAGGAGGACACCAAGGGACTGACTGAAAAAAGCAACCAGCTCACAGAGGAAATGAAGGGGAAGAACGAGGCCCTGAAGAATGTGGAGAAGAAATTGGGCAAGCTGACTAAGTTCATTGAGAACCAGAAGGAGAAATTCACCCAGCTGGACCTCCAGGATGTAGAGGTGCGCGAGAAGCTCAAACACACCAAGACCAAAACCAAGAAACTTCACAAACAGCTGCAGAAGGACAAGGAGAAGttggAAGAGGTGAGAAATGTCCCTGCCAGCAGTGAGAAGATCATTACAGAAGCCTCTGCCCAAAAGGAAGAGTTGGAGAAGCAGAAAGTGAAGGAAGAGGAGTCCCTGGCCCAAGTGATGGAGAGTCTTAAGGAGGAGACCAGCGGCCTGCAGAATGAGAAAGAGcaAAAAGAGAAGGAGCTCCTGGAGCTGAGTAAGGCAGTGAATGAGACACGCTCACAGATGGATGTAGCTCAGTCAGAGTTGGACATCTACCTTAGCCAACACAACACAGCAGTTTCACAGCTCAACCAAGCGAAAGAGACCTTGCAGGGCACTGCTGACACACTTCGTGAGAGAAGAGCTGCCATCAAAGACTTGCAGGTCAAAATACCAAAGTGTGAGCAGGAGCTTAAGAAGGATGAACAGGAGCTGGAACAGATCTCTGGGCAGGATGGGGAGGCCAGGGGAGTGGTAAGTGACCTGAGGCAGAAGGTTGAAGAGGCAAAAAGCTCTTTGTCCTCCAACCGCAGCAGAGGAAAAGTGCTGGATGCCCTCATGCAGCAAAAACAGAGTGGCAAGATCCCTGGCATCTTTGGACGCCTGGGTGACTTGGGGGCCATTGATGAGAGGTATGATGTTGCCATTTCTTCAAGCTGTGGCTCGCTTGATAACATCTTGGTGGACACCATCGACACAGCCCAGAAATGCGTTGTTTTCCTCAAGTCTCAGAATATCGGAGTGGCCACTTTTATTGGTCTAGATAAGatgaaggtttgggaaaaaaatatggttgcCATTTCCACACCTGAGAACATTCCCCGGTTGTTTGACATGGTGAAGGTGAAGGATGAATCCGTCCGACCTGCGTTCTACTTTGCCCTGAGAGACACGCTTGTTGCTAAAGATCTGGAGCAAGCCACTAGAGTGGCCTTCCAGAAAGATAAACGCTGGAGAGTGGTTACTTTGCAGGGACAGATCATCGAACAGTCTGGCACCAtgactggaggaggaggacgtgTAATGAAAGGCAGAATGGGCTCCTCTATTGGCACCGAAGTAACACAGGAACAGCTGGACCGTATGGAGAGtgcactgaatgagaaggtggtGCAGCTGCAGGGCTGGCAGCAGAGGAAACAGCAGCTCGAGGAGAAGGTGCACAAACAAAGACGGGAGCTCAGAGACATGAAGAACACATTGGAGAAATACACAGCCAGCATTCAGAGTCTTGAAGAGCAAGAGATGCTCATGAAGTCTCAGATGAAAGGGTTGGAAGCAAATGTTCTCGCTGCTGCCCCAGACAAGGCTAAGCAAAAACAAATGGAGAAGAGCCTGGATGCCTTCAAGAAAAACTTTGAGGCTGCCTCCAACAAGGCAGGAAAGGTCGAGGCTGAGGTAAAGCGACTTCACACCCTGATTGTGGATATAAACAGCCACAAACTGAAGGCCCAGCAGGACAAACTAGATAAGGTCAACAAAGAACTGGACGAATGTTCCTCAGCTATTACTAAAGCCCAAGTGGCTATCAAGACCGCAGGAAGAAACCTAAAGAAGTCTGAGGAAATAGTTGAACGTCTAGAAACAGAGACTAAAGAGAATGAGAAGCTCATGGAGGAGCTAATGGAGCAGTTAAAGAAACTGGAGGAACAAGCAGGAGAGATCATGAAGACTTGCCAAGATGCTGAGGAGGCACTGCCTGAAGTGCAGGAAGAGCATCGTGGAGTGCTACAAGAGATTAAGGCTGTTCAGGAAAAAGAGCATGCTCTGCAGAAAGAATCCTTGAACATCCGGCTGAAAGTTGAGCAGATCGACACAGCTATTTCTGAGTGCCAGAGTAAGAGCAAGCACTGGGATAAAGAGGCCACAAAGATCGTTCTGCATTCTATTGATGATAAACCAGCAGAGGAACTGCCTAAGCTGACCCCAGAGGATTTGGCGGCCATTAAGAACCCAGATGTTATTAAAAATGAGATTGCTCTGCTGGAAGACCGCTGTGCCCGGATGAAGCCCAACTTGGGAGCTATAGCAGAGTTTAAAAAGAAGgAGGAGCTGTATTTGCAGAGAGTAGCTGAACTGGATGAGATCACAACCCAGAGAGATGATTTCAAGCGAGGGTGTGAAGATTTGCGGAAGCAGAGACTGAACGAGTTCATGGCTGGCTTCAACATTATCACCAACAAGCTGAAAGAGAACTACCAGATGTTGACACTAGGGGGTGATGCAGAGCTGGAGCTGGTGGACAGCCTGGACCCGTTTTCTGAGGGCATCATGTTTAGTGTGCGTCCTCCTAAAAAGAGCTGGAAGAAGATCTATAACTTGTCTGGAGGAGAGAAAACTCTGAGCTCTCTGGCTTTGGTTTTTGCTCTGCATCACTTTAAGCCCACACCTCTTTACTTCATGGACGAGATAGATGCTGCGCTGGACTTCAAGAACGTGTCCATTGTGGCCTGCTACATTTATGAGCAAACCAAGAATGCTCAATTCATCATTATTTCTCTGAGGAACAACATGTTTGAGATGGCTGACCGTCTGATCGGCATCTACAAGACACACAACACCACCAAGAATGTTGGCATCAACCCCAAAACCATTGTCCTCAAAGATGTTGAAGTTGCATGA

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0051276 chromosome organization biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06675 SMC4; structural maintenance of chromosome 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203048 lncRNA upstream 116210 6583119 ~ 6583516 (+) False c17h3orf80
TU202908 lncRNA upstream 234846 6463101 ~ 6464880 (+) True G149800
XR_002651101.1 lncRNA upstream 725874 5969633 ~ 5973852 (+) True LOC111194498
XR_002651102.1 lncRNA upstream 725874 5969637 ~ 5973852 (+) False LOC111194498
TU202860 lncRNA upstream 733295 5966160 ~ 5966431 (+) True G149768
TU203072 lncRNA downstream 16378 6741526 ~ 6745025 (+) True G149934
TU203077 lncRNA downstream 27870 6753018 ~ 6763106 (+) True G149938
TU203089 lncRNA downstream 44816 6769964 ~ 6827772 (+) True G149944
TU203097 lncRNA downstream 79331 6804479 ~ 6807042 (+) True G149952
TU203106 lncRNA downstream 168168 6893316 ~ 6893651 (+) True G149960
XM_022678786.1 mRNA upstream 113357 6583046 ~ 6586369 (+) True c17h3orf80
XM_022678571.1 mRNA upstream 178938 6504153 ~ 6520788 (+) True LOC103025849
XM_022678780.1 mRNA upstream 198770 6419267 ~ 6500956 (+) False LOC103045401
XM_007258400.3 mRNA downstream 169180 6894328 ~ 6905641 (+) True nmd3
XM_015608157.2 mRNA downstream 169291 6894439 ~ 6905641 (+) False nmd3
XM_022678793.1 mRNA downstream 209982 6935130 ~ 6938983 (+) True LOC111194502
XM_022678794.1 mRNA downstream 213911 6939059 ~ 6941197 (+) True LOC111194503
XM_022678795.1 mRNA downstream 219341 6944489 ~ 6946968 (+) True LOC111194504
trnat-agu_9 other upstream 150501 6549152 ~ 6549225 (+) True trnat-agu_9
trnat-agu_8 other upstream 150897 6548756 ~ 6548829 (+) True trnat-agu_8
trnat-agu_7 other upstream 151979 6547674 ~ 6547747 (+) True trnat-agu_7
trnat-agu_6 other upstream 152299 6547354 ~ 6547427 (+) True trnat-agu_6
trnat-agu_5 other upstream 152706 6546947 ~ 6547020 (+) True trnat-agu_5
trnat-agu_10 other downstream 9947 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_11 other downstream 12813 6737961 ~ 6738034 (+) True trnat-agu_11
TU203154 other downstream 218517 6943665 ~ 6947936 (+) False G149984
XR_002651109.1 other downstream 524301 7249449 ~ 7251366 (+) False LOC111194506
TU203302 other downstream 1044536 7769684 ~ 7805254 (+) True G150099

Expression Profile