RNA id: XM_015608157.2


Basic Information

Item Value
RNA id XM_015608157.2
length 2028
RNA type mRNA
GC content 0.47
exon number 17
gene id nmd3
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6894328 ~ 6905641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACCAGCTGGAGGAGCACGTGCGGGTGGAGGCGCTGCTTTTCTCTGaCACACAGTTACTGTCTTTATACTCTCTCCGGAACCCGGATACCGCGGAAATCATGGAGTACATGCAAGCCCCAGCCACAAGCAGCCATGGGAACATCCTTTGCTGCACCTGTGGAGTGCCCATTCCTCCAAATCCAGCCAACATGTGCGTCTCTTGCTTGAGAACCCAGGTGGACATCTCTGAGGGAATTCCAAAACAAGTCTCTGTACATTTCTGCAAGCAGTGTGAAAGGTACCTGCAGCCCCCAGGCACATGGATGCAGTGTGCCCTCGAGTCCAGGGAGCTGCTCGCTCTCTGTCTGAAGAAACTGAAGAGCTCAATGACAAAGGTCCGGCTCATTGATGCTGGGTTCTTATGGACGGAACCACACTCAAAAAGAATCAAGTTGAAGCTGACCATTCAGAAGGAGGTCATGAATGGAGCCATCTTACAGCAGGTGTTTGTGGTGGAGTTTGTCATACAGGCACAGATGTGCGATGACTGCCATCGAGTTGAAGCCAAAGACTATTGGAAGGCAGTTGTGCAAGTGAGACAGAAGactgTTCACAAGaagactttttattatttggagCAGCTGATTCTGAAACACAAGGTGCACCAGAACACACTTCGCATCAAGGAGATTCATGAGGGCATTGATTTTTACTACAGTTCCAAGCAGCATGCCCAGAAGATGGTGGATTTTCTACAGTGCACAGTGCCCTGCAGATCAAAGGCTTCCCAGCGCCTCATCTCTCACGACGTGCACTCCAATACCTACAACTACAAAAGCACCTTCTCGGTGGAGATTGTGCCCATCTGTAAGGACAACGTAGTGTGCATGTCACCTCGTCTGGCCCAGAGTCTCGGGAACATGGGTCAGGTTTGCGTGTGCATCCAGGTGACCAGCACGGTCCACCTTATCGACCCAAAAACCCTGCAGATTGCAGAAGTGGATGCCAACACTTACTGGCGCTACCCTTTCAACAGCTTATGTAGTCCGAAGCAGCTGGAGGAGTTTATCGTCATGGATATCGACATCATCAGGGACCAGAAACTGGGAGCAGGAGCCGGTCTGAGATCCAATAGAcacacATTGGCTGAGGTGTGGGTTCAGAAGACCTCGGAGATGAACACCAGTCAGCAGTATCACTGTCGCACCTtcttgggacacctgctcaacATCGGTGACCTGGTGATGGGCTATGACTTTGCCAACGCTAACTTCAACGACGAGTATCTGAACAAGATGAATCCGCATCACGTTCCTGATGTGGTTCTGATTAAGAAGTGCTACGACAGGGCAAGGAGGATAAAGCGCAGGAACTGGAAGCTGAAGGAACTGGACAGGGATAGAGAAGGCATGGACTCAGATGAtgagagGCAATACCAAGACTTCTTGGAGGACCTTGAGGAGGATGAGAACCTGAGAAAGAATGTCAACATCTTCAGAGATGCCTCCAAGATTCCTGTTGAGAGCGACACTGATGATGAGGGCGCTCCACGGATCTCTCTGGCTGAGATGCTTGAAGACCTGAGTCTCAATGATGCCACTGGAGGAGAGGGTGCAGACATGATGACCGATTAGATATCTGAGAGAAGAGAACACAGAGTGTCAAGAATATATGCAGGATTCACAAGATTTATCTCTGAAAGTAGCTTGATTAAGTGGGTTGAAACAATGAATTCCAGCCTAAGACTGGTCTGGCTGTTCCCATAAGGTTTGGCTTTACCCTGCTGTGAAAGATTTGATAATTAAGTAGCTGATAAATTGAATCATGTGTTCCTCAGGTGGTCTTCTTACTACAGACACTGTCTGTTTCACCTTTTGTATTACTATACAAAAACCTATAATAATCTAATGCTAtatattaaaatagcaattttaatTCAAGGTTATTCTTGTGAAAGTCTTGATTAAAGTGCTCAGAGTGGTGGTTGTGTGCTGTAATGATGTTAAGTGCTGCTTCAACTtaacaaataaatgaagaaaatcCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203106 lncRNA upstream 788 6893316 ~ 6893651 (+) True G149960
TU203089 lncRNA upstream 66667 6769964 ~ 6827772 (+) True G149944
TU203097 lncRNA upstream 87397 6804479 ~ 6807042 (+) True G149952
TU203077 lncRNA upstream 131333 6753018 ~ 6763106 (+) True G149938
TU203072 lncRNA upstream 149414 6741526 ~ 6745025 (+) True G149934
TU203150 lncRNA downstream 29700 6935341 ~ 6942682 (+) True G149984
TU203157 lncRNA downstream 29700 6935341 ~ 6942682 (+) False G149984
TU203172 lncRNA downstream 343524 7249165 ~ 7251366 (+) True LOC111194506
TU203177 lncRNA downstream 347385 7253026 ~ 7254591 (+) True LOC111194505
XR_002651108.1 lncRNA downstream 347386 7253027 ~ 7254335 (+) False LOC111194505
XM_022678787.1 mRNA upstream 169094 6702236 ~ 6725345 (+) False smc4
XM_007258396.3 mRNA upstream 169291 6699726 ~ 6725148 (+) True smc4
XM_022678786.1 mRNA upstream 308070 6583046 ~ 6586369 (+) True c17h3orf80
XM_022678571.1 mRNA upstream 373651 6504153 ~ 6520788 (+) True LOC103025849
XM_022678782.1 mRNA upstream 393483 6475497 ~ 6500956 (+) False LOC103045401
XM_022678793.1 mRNA downstream 29489 6935130 ~ 6938983 (+) True LOC111194502
XM_022678794.1 mRNA downstream 33418 6939059 ~ 6941197 (+) True LOC111194503
XM_022678795.1 mRNA downstream 38848 6944489 ~ 6946968 (+) True LOC111194504
XM_022678801.1 mRNA downstream 611363 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA downstream 611366 7517007 ~ 7540136 (+) True LOC103022780
trnat-agu_11 other upstream 156405 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 159271 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 345214 6549152 ~ 6549225 (+) True trnat-agu_9
trnat-agu_8 other upstream 345610 6548756 ~ 6548829 (+) True trnat-agu_8
trnat-agu_7 other upstream 346692 6547674 ~ 6547747 (+) True trnat-agu_7
TU203154 other downstream 38024 6943665 ~ 6947936 (+) False G149984
XR_002651109.1 other downstream 343808 7249449 ~ 7251366 (+) False LOC111194506
TU203302 other downstream 864043 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 968999 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1743189 8648830 ~ 8656708 (+) True G150321

Expression Profile