RNA id: XM_022678643.1


Basic Information

Item Value
RNA id XM_022678643.1
length 2638
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC103034819
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1639309 ~ 1671242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgTATACCACCCAATgttccccagataagagcacctaaatgctttacaggcTTTTTCCTACAGGATTTTTACACTACAGCAAGAATACCTTTACCTGCAGAGAACTGAACAGGTGAGAGTTGTTGTGATGTAGCATGGAGTATTAGCTCTGTGAGATAAGAGGATTAGACGCTGCTCTGAGTTCACAGAAGCAGATCAGACTGGGTCTCCCGCACCATATGGGTCCAACGGACAGCAATGCTCACATAGCAGATACCAAAATACAGAGCAGAACCATGATCCACAGCTCAGCTTCTGTTTAAACCCAGCGGAGGAACATCACTAACTGACCTGAGGATAAACCAACCCGCTGTCTCCTTCTGTAGGGTGTAAGGaagcaggtgaatcATGGCGGAGATGGACGCTTCACCCCTGCAGCATTTCGTGGTGGCGAAGAGGACGATCAGTGCCGTGTTTGatcagctgctggagtttgTTAAAGAAGGATCAGAGTTCGTGGAGGagACGTGGAGGAGTGAGGATCTGGAGCATGTGGCGGAGGAGGAGCAGTGTATGGAGATCCAGTCCTGCTCCAGGAAGCTGGAAGCTATTTGGGAGGTTCTGGCCCGCAGACAGATGAAGGTGGCGTTTTTCGGCAGGACCAGTAACGGGAAGAGCACAGTGATTAACGCCATGCTGAGGGAACGGGTGCTGCCCAGCGGAATCGGCCACACCACCAACTGCTTCATCAGTGTGGAGGGAACTGATGGAGACCAAGCGTTCCTCACCACTGAGAACTCCGAGGAGAGGAAGAGTATAAAGACGGTGAATCAGCTGGCCCACGCTCTGCACATGGACAGGAATCTGGACTCCGGCTGTCTCGTGAGGGTTTTCTGGCCCAAGACCAAATGCGCCCTGCTGAGGGACGACCTGGTGCTGATGGACAGTCCAGGTACTGATGTCACGTCTGAGTTGGACAGCTGGATTGATAAGTTCTGTCTGGACGCTGATGTCTTTGTTTTGGTGGCGAACTCTGAATCTACACTCATGAATACAGAAAAGCATTTTTTCCATAAAGTCAGTGAACGAATCTCCAAACCCAACATCTTCATCCTGAACAATCGCTGGGACGCGTCTGAGACCGAGCCCGAGTATCTGGATGGAGTGAGGAAGCAGCACATGGACCGCTGTGTCAGTTTCCTGGTGGATGAGCTGAAGGTGGTATCTCCTGATCAGGCGCCCAACCGGATCTTCTTCGTATCCGCCAAGGAGGCGCTGAGTGCCAGGATCCACCGGGCCCAGGGCATGCCGGAGACGGGAGCTGCTCTAGCTGACGGCTTCCAGGACAGACTGCAGGAGTTCCAGAGCTTCGAGAGAACGTTTGAGGAGTTTATCTCTCACTCCTCAGTAAAGACTAAGTTTGAGCAGCACACGATCCGAGCCTGGCAAATCACAGAGTCCCTCAAGACCATCATGGACGCCATCAACATCACCTCCGCTGAGAAGAAGGTTCTGTCTCTGGAGGATCGGGAAGCTCTCATGGACCGTCTGGATTTTGTGCGCAATCAGATTAACTTTCTGACGGAGGAAACCAAAGACAAGATAAAGGTCATCACGGATGACATCGCAGCCAAGGTAGCCAGTgctctggtggaggagatccaGGGCTTCTCTGTGATCGTGGATGAATTCTGCTCTGATTTTAGCCCAGCACCCAACGCCCTGACCCTGTACAAAACCaAGCTGATTGCGTACGTTGAGGAGAGGATGGTGAGGAACTTGGCCCGGCGATGCTCCAGCAGCATCAGTGGCTGTGTGCTATCATCTCAACGAGACTTCATAAACATCATCAGTCCTCTGCTGCCCTCTGCTGCCCGGGGGCACCTGCACATGCACGTCCCCAGCAGGAGGTTTGAGATGGCGTATGAACTGAACCTGGGCGCTCTGTGCTCAGACTTCCAGGAGGACATCCAGTTCCAGTTCTCTCTGGGCTGGACGGCGCTGGTGAACCGGTTCCTGGGTCCGGCTAAAGCCAAGCAGGCTCTGAACATGCTGGACAAGAACTTACGGGCCTCCACTCACCCGGCTCCTATAGGAACCCCGGCTCAGGAGGAGCTAGCGGTCTCGATGGCCACCGGACTCGCCTCGCTCACCTCCCGAGCCTCCATGACTGCACTGGTGATCGGTGGAGTGGTGTGGCGCTCAGTGGGCTGGAGGGTCATTGTTCTCTCTGTGAGTCTCTATGGGCTCCTGTATTTATACGAGAAGCTGACCTGGACTAACAGCTCCAGAGAgaaggccctgaagcagcagtTTGTGGAGTACGCCACCCAGAGGCTGCAGGCCATCTCCCACATCACCAGCAGCAACTGTGGCCTGCAGGTCCAGCAGGAGCTGGTGGGCGTATTTGCCCGCATGTGTCAGCAGGTGGATAAGAGTGAAATGGAGCTGGAGACGGAGATCCGCAAACTCAACGCCAAGATCCAGCGGCTGGAGAGCGTCCAGAGACACTCCAAAACTCTCAGGTACACGAGAGACAGACGCAGGAATTCCACTGCAGATGCTGCTTTCAGAGCCAATCATATTACATATGAGTATCAACCAGAAaccctagtgaaaaaacagtagattaaactatactaagcattattatgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201025 lncRNA upstream 4552 1633060 ~ 1634757 (+) True G148521
TU201007 lncRNA upstream 49701 1589157 ~ 1589608 (+) True G148507
TU201006 lncRNA upstream 55284 1581352 ~ 1584025 (+) True G148506
TU200995 lncRNA upstream 127540 1508432 ~ 1511769 (+) True G148498
TU200986 lncRNA upstream 140976 1490482 ~ 1498333 (+) False G148490
TU201027 lncRNA downstream 15894 1683458 ~ 1688461 (+) True G148523
TU201035 lncRNA downstream 29520 1697084 ~ 1712456 (+) True G148531
TU201054 lncRNA downstream 129844 1797408 ~ 1802305 (+) True G148546
XR_002651075.1 lncRNA downstream 316049 1983613 ~ 1989391 (+) True LOC111194451
XR_002651076.1 lncRNA downstream 316063 1983627 ~ 1989391 (+) False LOC111194451
XM_022678640.1 mRNA upstream 46809 1552795 ~ 1592500 (+) True LOC103025667
XM_022678638.1 mRNA upstream 103826 1523601 ~ 1535483 (+) True proc
XM_022678639.1 mRNA upstream 103826 1523602 ~ 1535483 (+) False proc
XM_022678637.1 mRNA upstream 157783 1464657 ~ 1481526 (+) True LOC103026285
XM_022678636.1 mRNA upstream 178587 1447455 ~ 1460722 (+) True LOC107197232
XM_022678652.1 mRNA downstream 199559 1867123 ~ 1886581 (+) True LOC103035142
XM_022678653.1 mRNA downstream 229909 1897473 ~ 1902454 (+) True LOC111194472
XM_007232766.2 mRNA downstream 288598 1956162 ~ 1960545 (+) True LOC103031003
XM_022678655.1 mRNA downstream 336035 2003599 ~ 2193725 (+) True LOC103032064
XM_022678658.1 mRNA downstream 336035 2003599 ~ 2193725 (+) False LOC103032064
TU200917 other upstream 433909 1200285 ~ 1205400 (+) True G148442
TU201123 other downstream 445109 2112673 ~ 2114465 (+) True G148599
TU202027 other downstream 2337354 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 2459385 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 2491636 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2624919 4292483 ~ 4386634 (+) False LOC111194484

Expression Profile