RNA id: XM_022678653.1


Basic Information

Item Value
RNA id XM_022678653.1
length 4982
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC111194472
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1897473 ~ 1902454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGCTTGACCTATCTAGAGGGGGAAAGAGTTTTcagctatttttgtttttatacattttttttgttatgataTGATTTTGTAAAACTCTGTTTAGAAAGATGTATTAATGCTGTACCCATcttttttaaaatctgaatGTGGCAGATATATTTgtgaaatatttgtttaaatatttggcccccccccctccactcTAAAATGGTATGTCCTTCTTAAATTAACCACTAGGGGAAGCCTATATAAGGAGTCAGTCTTCCATGGCTGAGAGAGTGGAAATAAGTAGAAAGACAGTGATATTGTGGATCACTGCTTCTGTAAAGATTAAGAGAGTGTTTTGAAAAAACAATTTGTGGTGTTGTTGAACCTctctaaattatatatatactttatttttttttttttttttttttctcttcattttttcatcaaatggactcatttttttccatcaaaagcaccaataaacacacatttgCACTGAAGGTGCTATGTTGTTTGGTCAATTTTTATGTGTAGAGGTGGACATTTTTAGCAGTCCCATTTAAAAGAGGCCCACAACCCTGGCGGACTCTACTACCCGCACTGCAAAGTGTGACAGATGGTGGCAGCGGTGGGATTCCACCGAagaaatttggtggaatactgGCTCCTACACATAAGGTTATGGTAAGACGCAAAAAGGTGCTGTTGCCTAAACGGACTGGGCTACGGTCGCAGACAACCAGATTTCCAAAAACAGAGTCCAGAACTGATGAGGACAAGGAACGCTGGGATACAATGGAATCAGAAGAGGATTTTTCAGATCAAGGTGGGCAGCCTGAAGAGCAAGCTGGGTTTTCTGGCTCACCAGAGGATCCATCGGGGATGTCCACACTAACAACACTTCTGAGTAAGTTTCTCACCTCACagcaagaaagagaggagagactgtTTAAAGAACTTCAGGATCTGAGGACCAGTGTAACAAGACCTGTGCCTGTTGAACAGAGCACTGGAGAAGACACTTCTGCTGCAGCTGGAACACCAAGGTTCCTGACATCTACACTTTCTTCAGATAATCAAAGCCCAAGAGTACCCCTTCCCACACCAAGAGCCAGACCTTCTCAAGTTTCTCAAGATCCGGTTTCACAGCCTGTTCAGGTCTTCCTGCCAACCCAGTCAGCACCTACTCCAAGGGAAAGAAACATCAGAGACCTGTTTCGGCATGAGCCACAAATGCCAGTATTTCGAGATGGTGAGGACATTGAGAACTATCTACTTCGATTTGAACGCCTGGCAAAAACTTGGTTGTGGCCAGTTGAAGAGTGGGCCTATAGATTGGTACCTTTGCTAACAGGTAAAGCACTGGAAGCTTATACAGGAATGGATGAGGAATTATCCAACTCCTATCCGGATCTGAGAGAGGCACTCTTAGAAAAGTTTGACATCTCTGAAGAAACCTACCGACGAAGATTCAGAGGGACAACTGTTCCAGCAGGTGAAACACCTAAAGAAACCTATCACCGTCTCAAAGGTCTCTATCGTCGATGGATGAAACCAGAGACACGCAGCAAGGAGCAGATTGGAGAGATAGTCATCCTGGAGCAGCTGTTTCGAGTTCTGCCTGGAGATATACGCACATGGGTTCAGGAACATGAGCCAACAAATGGACTAGAAGCAGCTCAACTGGCCCAACAGTACCTGAATGCTCGTCGTGGAATAGCCCGTTCTTCACAAGCCTCTCTGCGGGAGTCAAGACCTGCCAGGGTCCATGCCAGCCCTTCTCACTTTGAGCAAGACCAGGACCAGTCGGTGATGCCAGCGGTAGGTCAGAAGGAGACACCACAACGAAAAGGTACTCTCATTTGCTTTTATTGTGGCCAGCAAGGACACAAAGCCTCTGTGTGCCCTCTGAAAAAACCAAAACTTTCTAGTCTGTGTTATGTCCCAAGAGAGGGCGATGTGTCCTCATTGATGGTAGGAGAGTCTGTGTCCAGTCATATTTCTGGTCGGATAGACAAGGACTCCAGTGACTGTATTGAACTAACAGTATTTGTTAATGGACAACCTTTACAGGCTATGGTGGACACAGGGAGTGCTATATCTTTGGTTAAAAGAGATTTTTTGCCACCTAGTATTGTAAACTTTTCCAGATTGACCAACATTCAGTGTGTACATGGGGATGTTAAAATGTATCCAACTGCTGATGTCACTCTTACAGTTCATAATGATGTGTTTCTTATGCAAGTGGGAGTTGTTGATGATTTGCCAAAAGACATGGTGCTAGGAAGGGATCTGCCAGTCTTAGATGATCTAATTGGGGATGTTCATCCTCTAACTAAGCTTGCTTGCCCTGTAGTCACTCGCTCCCACACTAAAGCAGGCCTTGAACCATTACCCTTAATTTCAGATACTTTGTTTGAGGGTGGTAAGGAGGGTCCAAGAAAGTCTAGGCAGAAACGGCGTCTAGAAAAGGCACTAGGTGCACCATCTGGGTCCCCAAATACCAATAATCTTACTACTGGGTTGTGGAAGGTACCAGAGAACATAGGGGAACTTCAGCGAGAAGATGCTTCTCTTACATCCTTATTTGCACAAGTGAATGATAAGGAGGAAGGTGGTGGGCTGTTAAGCTGTAAGGATAAGTACAAAATTGAGAATGGTATCCTTTACATAGTAGAGCCTCAAGGTAATCGTTTGGTTGTACCCTCCAAATGTAGACCTCTTGTTTTAAACCTAGCACACACCATACCATGGGCAGGTCACCTTGGACAGCAGAAAACATACCTCAGGGTTAGTCGCCGGTTTTTCTGGCCTTCAATGTATACAGATGTTAAAGATTTTTGCAGGTCTTGCCCTGAATGCCAGAAAACTAGTCACATCCGCCACTCAGACAGAGCCCCTCTTCAGAGCATGCCTATTATTGTTACTCCATTTAGGCGTATTGCAATGGACATTGTAGGTCCTTTGGAAAAGAGTAGCTCTgggtttaaatacattttggttATTTGTGACTATGCCACTAGATTTCCTGAAGCAGTTCCTTTGCGgtccatcaccaccaccaggaTTATCCAAGCGCTTGTTCACCTCTTTGCCAGAGTGGGTTTTCCAGATGAAATCCTGACAGATCAAGGGACAAACTTCACTTCTCGCCTGATGTCCCAATTGTACCAGCATCTAGGGATCACAGGTATACGCACCACTCCCTATCATCCCCAAACGGATGGCCTGGTTGAAAGGTTCAACCAAACCCTCAAGTCCATGCTGAGGAAGTTTGTGTCAGACACCGGGAAAGATTGGGATAAGTGGTTGCCTTTTCTGTTATTTGCATACAGGGAGGTACCACAAGCATCAACTGGATTTTCCCCATTTGAACTTTTGTATGGTTGGTCAGTGCAAGGACCTTTGGACCTGTTACGCCATCAGTAGGAGAGCAAGCCTCAAGATAGTCAAGCAGAAGGAATTGTAAGTTTTATCTTACAAATAAGAGACCGTCTTGAATCCTACAGGGAGGCTCGTCTGCATCTGGAAAAGTCCcaacagaaacagaagtgtTGGTATGACCAAAAGGCTCGACAGAGAGAGTTCAAGCCTGGACAGAAGGTTCTATTGCTACTACCAACTTCTACCAATAAGCTCCTGGCAAAATGGCAAGGCCCATTTGAAGTTTTGAGAAAGCAAGGCCCTGTGACGTATGAGATCTCTCATCCTGAAAAGGGTAAGCCATCGCAGACCTATCATGTGAATCTCATTAAAGAGTGGAAGGAGCGAGGAAAAACTCAGTTGGCACTGATGATCCAACAAATAGAAGGTGATGGTGGGGATGTTGCTGATAAGCTACAATCCTGGAGTTCTGCATCTCTTCCAAAGACTGACCATCTTACCGTACACCAGCAGAAATCCTTGCAATCTGTGTTCAAAAATTGCCCCTCTGTGTTTCAGTCCAAACCTGGTCGGACAAACGTGGTCAAGCATGTCATCCACCTCAAGGATGACACACCCATCCGACAGAGACCTTACAGGGTACCTGAAAGATTGGTAGAGCCTCTCAAGATGGAAATCCATACCATGTTGGATTTGGGAGTTATTAAACCATCTAGGAGTGAATGGTGCAGTCCAATTGTAAATGTTCCAAAGCCAGATGGATCACTGAGAGTCTGCGTTGACTTCAGAAAGATCAATGCAGTGTCTAAATTTGATGCATATCCAATGCCTAGGATTGATGAACTTCTGGAAAGGCTCGGGAAAGCACAGTACATCACAACCCTTGATCTGTGTAAGGGATACTGGCAGGTACCATTGGCTGAAGAATCACAGGAATACACAGCATTCAGAACTCCTCAGGGCCTATTCCATTTCACTGTCATGCCTTTTGGACTTCATGGGGCGCCAGCAACCTTTCAGCGCTTAATGGACTGTGTTCTGAAGGGATGTGATGCTTTCTGTACTGCATACCTGGATGATGTTGTTATTTTCAGCTCCAGTTGGGATGAGCACCTCAACCATGTTGAATCTGTACTTCAAAACCTGGCAGCTGCAGGTTTAACCTTGAATTTGGACAAATGTGAGTGGGGtcaaacagaggtacgatactTGGGCTATCGACTAGGAAGAGGATTGGTGCACCCCCAAAAAGACAAGGTGGAGGCTATTAAGAATGCCCCGCAACCACATACGAAAAAGCAGGTGCGATCTTTCCTAGGATTGGTTGGCTGGTATCGGCGTTTTGTTCCACAGTTTGCCACCCTTGCTGCCCCACTAACCGAATTGACTCTGAAATCAGGAAAGAACCCTGTACATTGGACTGAGAACTGTAAGAAGGCATTTCAGGCTCTCAAAGATGTTCTGTGCTCAGAGCCCGTACTGGTCAGTCCTGATTTCAACAAACCCTTTACTGTGCAGGTGGATGCTTCCGCTGTTGGCATTGGTGCTGTCCTGGTCCAAGGTGTAAAGGGTGAAGAGCGTCCGGTACTGTATCTGAGTCGTAAACTACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201054 lncRNA upstream 95168 1797408 ~ 1802305 (+) True G148546
TU201035 lncRNA upstream 185017 1697084 ~ 1712456 (+) True G148531
TU201027 lncRNA upstream 209012 1683458 ~ 1688461 (+) True G148523
TU201025 lncRNA upstream 262716 1633060 ~ 1634757 (+) True G148521
TU201007 lncRNA upstream 307865 1589157 ~ 1589608 (+) True G148507
XR_002651075.1 lncRNA downstream 81159 1983613 ~ 1989391 (+) True LOC111194451
XR_002651076.1 lncRNA downstream 81173 1983627 ~ 1989391 (+) False LOC111194451
TU201079 lncRNA downstream 88110 1990564 ~ 1990776 (+) True G148565
TU201080 lncRNA downstream 94837 1997291 ~ 1997591 (+) True G148566
TU201106 lncRNA downstream 160780 2063234 ~ 2063906 (+) False LOC103032064
XM_022678652.1 mRNA upstream 10892 1867123 ~ 1886581 (+) True LOC103035142
XM_022678646.1 mRNA upstream 226231 1639309 ~ 1671242 (+) True LOC103034819
XM_022678643.1 mRNA upstream 229909 1639309 ~ 1667564 (+) False LOC103034819
XM_022678645.1 mRNA upstream 229909 1640297 ~ 1667564 (+) False LOC103034819
XM_022678647.1 mRNA upstream 229909 1640902 ~ 1667564 (+) False LOC103034819
XM_007232766.2 mRNA downstream 53708 1956162 ~ 1960545 (+) True LOC103031003
XM_022678655.1 mRNA downstream 101145 2003599 ~ 2193725 (+) True LOC103032064
XM_022678658.1 mRNA downstream 101145 2003599 ~ 2193725 (+) False LOC103032064
XM_022678656.1 mRNA downstream 101146 2003600 ~ 2193725 (+) False LOC103032064
XM_022678657.1 mRNA downstream 101146 2003600 ~ 2193725 (+) False LOC103032064
TU200917 other upstream 692073 1200285 ~ 1205400 (+) True G148442
TU201123 other downstream 210219 2112673 ~ 2114465 (+) True G148599
TU202027 other downstream 2102464 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 2224495 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 2256746 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2390029 4292483 ~ 4386634 (+) False LOC111194484

Expression Profile