RNA id: XM_022678668.1


Basic Information

Item Value
RNA id XM_022678668.1
length 2906
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC103035460
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 2228526 ~ 2261643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCTCATTCGCTAAGAAGTTATTTGAAGTTGAAGTGAGCCCGAGGAGGTGCGTTGGGGAGCACGAGCAGCACTAGGAAGGACTGAGAGCGCGTGCAGGGCACTGTAGGAAGATGGCGATGGACCAAGCAAGGACGACAATATCAAAAATATTTAATGGGGAACCTCGTTCCTATACGCGCTTCAACCTCACCCAGAACATGGAGGGGGACAACAGCCAGGTGGAGATGAAGCTGTCCTCCGATATGGACGAGGAGGTGGGGGGGAACGGCGTCGGGGAGCACATGAACCACCACCCGCGCCCGGCCTACACCAGCAAACCCAACCAGCGCTCCCCCAGGAGCATCTGCTTCATGGGCATCGGCATTCTCCTGCTCTTCATCATCGGATACCTGGTCGGCTACCTCTCCCACCGGCGGACAGACCGAGCAGCTCCGAGCTGTGCAGAAGCTCTGTCCTCCGACGACAGCGACGGATCAGCTCCCATACAAACGGTTCCCTCTCTCGGCTGGAAAGACATCACAGCCTTATTTAAAGATAAACTCAGCACAGCCAACATCGAGAGCAGCCTCAGtgagttCTCCATCGCTGATCATCAGGCCGGCTCTGCAGGAGACGAGGCTCTTGCGAATAAGCTGATGAGGAAATTCAGGGATTATAATATGAACCCCTGGACTGATGAGCACTTCGTCAGAGTCCAGGATCCTCCGTCCAGCGGCTCCAACAAAATCACTTTCCGTGATCAGTCTTTCTCTGAGTCCGGCTTCTTATCTTACAGCGGAACTGGATCAGTACAGGGGACGCTTTTGTACGCATATTATGGACAAATGGATGACTTGAGGCGCCTGCAAGATCTTACCATCGACTTTAACGGGAAAGTCCTTTTGGTCAGAGCTGGAAAAATCAGTTTTGCTGAAAAGgtggctaACGCAGCTGCTGTGAATGCGagtgctgtgctgatctacccGGATCCTGCAGATTACTCCATCGGGGAAGGAACTGATCTGTATGGACATGTTCATCTGGGCTGTGGAGATCCCTACACTCCAGGATTTCCATCCTTCAATAACACTCAGTTTCCTCCAGCCCAGTCCTCAGGCCTGCCCACCATCCCCGCCCAGACCATCCGGCCCAGTACAGCTGCAGCTATCATGGgGATGATGGAGGGTCGTGATCCTCCTCGTGGCTGGGGGAACGGAGGGCTCCAGAAGTATAAGCTTGGAGGAGATGATGacctggtgactgtggaggtgaATAATGTCCTCACTGAGAAGAAGATCCACAATGTGTTCGGGGTCATTAAAGGTTTAGTAGATGCAGATCGCTACGTGGTGATTGGTGCTCAGAGGGATGCCTGGGGTCCTGGATACGCCAAGTCTACAGTCGGCACCAGTTTGCTGGTTGAAATCGCCAGAAGTATTAGCGAGATGATCAGCAAAAATGGATTTAAGCCCAGGAGGAGTATAGTGTTCGCAAGCTGGAGTGCTGGAGAATATGGAGCTGTTGGCGCCACCGAGTGGCTGGAGGGTTATCTGTCTTCCCTGAACATGAAAGCATTTTCCTACATCAGCCTTGATGGAGTCGTTACGGGTCCCACTTTTAAGGCCAGTGCGAGTCCCCTGATGTACGACGTGATTCAGAGCACACTAAAAGAGGTTTCTTCACCCAGTgattccagcaggactttgtaTTCTCAGGTGGCTGGAAGCAACTGGGAATctgctgtGATGGAGCCGATGACGTTATCAGACACTGCCTATCCGTTCCAGGCTTTCACCGGCATTCCGTCAGTCTCGATCCGCTTCACTTCTgaaaAAGAGTATCCCTTCTTTGGCACCATGTTGGACACCAAGCAGAATCTGGACATTAAAGTATCTTACTCCTTATCAGCGCTGGTTAAAACAGCAGGAGAGATAGCCGGTCAGATGGCTCTTCGGCTGGTCCACGATCACCTGATCAGACTGAACGTGGAGAAATACACCAGCATCCTCCGCAGCAACGTGGCCCTGATCAACCGAGAGGTCATCGGTCTGCAAGCGtCTGGCCGCGTTCCAAAGACCCTGAAAATGCAGTGGCTGATGTCGGCTTTGGGATCGTACAGTCGCGCCTCCAGAAAACTCACCAGCAACATCCAGAACAGCGACCTGGGGGACTTTGAGCAGTGTCGCATCATCAACAACCAAATCATGGGGGTGGAGAGGGACCTTCTGTCTCCATACGTGTCTCCACAGATCAGTCCGTTCAGACACATACTGCTGGGCTCTGGATCTCACACTCTGGGGGGGTTAAGGGCTCACCTGACCGCCATAAAGGAGGGCTCGGCCAGCGCCGACCTCGACCTGCTGAAGAACCAGTTCGCTCTGACCACCTGGACCATCCAGAGCTGTGCCAACGCACTGGCAGGAAGCGTGTGGGAGATGGACAACGAGATTTAGGCCTGTGCCTCGATTGTGAAAAACAACGTCCCTTAAAATAACAATAGGTTTCACTCCTCAGGTGTGCACAGGTACATTAGAAGAATGCCTTGAAGCTGTACTGTTCTGTGTTTCGAAATAAAACCTaagatatttaataatttaagtgGTTTATAGAGCTATTAAAGCTATTGATGCTACTATAAAGTAGGGGCGTGCAATTTGGTAGAAATGCTGTATCACAAAATGTATATGGTGATACAGCACAAAATGACACAAAATTATAGCTTTAGATTCCTAAAAATACAGTGGATTTGATTCAAAATTGTGTTTGAATCCAATTAAACAGGAGTAATAACCCAATACAATTCACTTATACACTTATATTTCAATTGTATTGAAATATGCAGCGTGTCAGAGCTCTTAAAGTGCtaaaaaaatccacaatatGCTaagaatattaaaattatacagctctgcaaaaaaataaaaa

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process

KEGG:

id description
K06503 TFRC, CD71; transferrin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201092 lncRNA upstream 39239 2135450 ~ 2189287 (+) True G148571
TU201090 lncRNA upstream 44575 2098920 ~ 2183951 (+) True G148569
TU201133 lncRNA upstream 94432 2132945 ~ 2134094 (+) True G148606
TU201131 lncRNA upstream 99794 2126045 ~ 2128732 (+) True G148605
TU201130 lncRNA upstream 99794 2127126 ~ 2128732 (+) False G148605
TU201144 lncRNA downstream 3492 2265135 ~ 2266924 (+) True G148608
TU201156 lncRNA downstream 69949 2331592 ~ 2332962 (+) False tnk2
TU201162 lncRNA downstream 102982 2364625 ~ 2367099 (+) True G148618
TU201163 lncRNA downstream 104265 2365908 ~ 2366671 (+) True G148619
TU201167 lncRNA downstream 136432 2398075 ~ 2398729 (+) True G148621
XM_022678655.1 mRNA upstream 34801 2003599 ~ 2193725 (+) True LOC103032064
XM_022678658.1 mRNA upstream 34801 2003599 ~ 2193725 (+) False LOC103032064
XM_022678656.1 mRNA upstream 34801 2003600 ~ 2193725 (+) False LOC103032064
XM_022678657.1 mRNA upstream 34801 2003600 ~ 2193725 (+) False LOC103032064
XM_022678662.1 mRNA upstream 34801 2003600 ~ 2193725 (+) False LOC103032064
XM_022678677.1 mRNA downstream 31989 2293632 ~ 2403354 (+) False tnk2
XM_022678675.1 mRNA downstream 31989 2293632 ~ 2403354 (+) False tnk2
XM_022678670.1 mRNA downstream 69977 2331620 ~ 2403354 (+) True tnk2
XM_022678669.1 mRNA downstream 71537 2333180 ~ 2403354 (+) False tnk2
XM_022678672.1 mRNA downstream 71537 2333180 ~ 2403354 (+) False tnk2
TU201123 other upstream 114061 2112673 ~ 2114465 (+) True G148599
TU200917 other upstream 1023126 1200285 ~ 1205400 (+) True G148442
TU202027 other downstream 1743275 4004918 ~ 4009735 (+) False G149226
TU202053 other downstream 1865306 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 1897557 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 2030840 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 2050968 4312611 ~ 4386634 (+) False LOC111194484

Expression Profile