Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022678688.1 |
| length | 4698 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 23 |
| gene id | mib1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035913.1 |
| NCBI id | CM008316.1 |
| chromosome length | 28317440 |
| location | 3028383 ~ 3139358 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0021521 | ventral spinal cord interneuron specification | biological_process |
| GO:0045747 | positive regulation of Notch signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0060113 | inner ear receptor cell differentiation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0002090 | regulation of receptor internalization | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0001885 | endothelial cell development | biological_process |
| GO:0021986 | habenula development | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045685 | regulation of glial cell differentiation | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0021519 | spinal cord association neuron specification | biological_process |
| GO:0021520 | spinal cord motor neuron cell fate specification | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU201755 | lncRNA | upstream | 1183 | 3023810 ~ 3027200 (+) | True | G149024 |
| TU201749 | lncRNA | upstream | 4986 | 2979507 ~ 3023397 (+) | True | G149018 |
| TU201780 | lncRNA | downstream | 84059 | 3223417 ~ 3274194 (+) | True | G149040 |
| TU201869 | lncRNA | downstream | 145366 | 3284724 ~ 3285222 (+) | True | G149109 |
| TU201894 | lncRNA | downstream | 227094 | 3366452 ~ 3368137 (+) | True | G149126 |
| TU201899 | lncRNA | downstream | 242585 | 3381943 ~ 3384833 (+) | True | G149130 |
| TU201913 | lncRNA | downstream | 281872 | 3421230 ~ 3463220 (+) | True | G149142 |
| XM_015608782.2 | mRNA | upstream | 25761 | 2994206 ~ 3002622 (+) | True | LOC103027938 |
| XM_022678683.1 | mRNA | upstream | 60806 | 2937301 ~ 2967577 (+) | True | LOC103027018 |
| XM_022678681.1 | mRNA | upstream | 137072 | 2797862 ~ 2891311 (+) | True | LOC103030361 |
| XM_022678682.1 | mRNA | upstream | 137072 | 2797862 ~ 2891311 (+) | False | LOC103030361 |
| XM_022678673.1 | mRNA | upstream | 625029 | 2346292 ~ 2403354 (+) | False | tnk2 |
| XM_015608792.2 | mRNA | downstream | 59427 | 3198785 ~ 3207918 (+) | True | gata6 |
| XM_022678690.1 | mRNA | downstream | 156622 | 3295980 ~ 3359851 (+) | True | LOC103030995 |
| XM_022678691.1 | mRNA | downstream | 156627 | 3295985 ~ 3359851 (+) | False | LOC103030995 |
| XM_007231100.3 | mRNA | downstream | 445887 | 3585245 ~ 3632868 (+) | False | LOC103028887 |
| XM_007231099.3 | mRNA | downstream | 445888 | 3585246 ~ 3632868 (+) | True | LOC103028887 |
| TU201123 | other | upstream | 913918 | 2112673 ~ 2114465 (+) | True | G148599 |
| TU200918 | other | upstream | 1822983 | 1200285 ~ 1205400 (+) | False | G148442 |
| TU202027 | other | downstream | 865560 | 4004918 ~ 4009735 (+) | False | G149226 |
| TU202053 | other | downstream | 987591 | 4126949 ~ 4131384 (+) | True | G149243 |
| TU202070 | other | downstream | 1019842 | 4159200 ~ 4160106 (+) | True | G149256 |
| XR_002651093.1 | other | downstream | 1153125 | 4292483 ~ 4386634 (+) | False | LOC111194484 |
| XR_002651094.1 | other | downstream | 1173253 | 4312611 ~ 4386634 (+) | False | LOC111194484 |
