RNA id: XM_022678711.1


Basic Information

Item Value
RNA id XM_022678711.1
length 2096
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC103021386
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4121315 ~ 4123410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAACATGGCAGACGCTGCTGTGAAAACTCTGGACTCGCTGACCTGCCCCATCTGCCTGGACCTACTGAGGGATCCAGTGGCGATTCCCTGTGGACACAGCTTCTGTCTGGACTGTATTAAGGACTGCTGGCATCGAGATGATCAAAGGGGGGTCTACAGCTGCCCCCAGTGCAGACACACCTTCACCTCGAAGCCTGTCCTCAACAAGAACACCATGCTGGCTGAACTAGCCGAGGCTATGAGGACTACTGAGGtccaagctgctgctgatcctccttctcttcctgctgctgctgccaatGGTTTTTCTGCTGGATCTGAAGGTGAGGAGTGCGACGTTTGCACTGGGAGAAAACGTGCGGCTGTTAAATCCTGTCTGGTTTGTCTGGCCTCTTATTGTCAAGCTCATCTTCTGCCTCATTTTGAAATTTCCGTCTATAAGAAGCACAAGCTGGTGGAAGTCTCCGTGAACCAGGTAAAGAACCAGGAGAAGAACCAGGAGAAGCCTCAGGAGAAGATCAACGCAGGCTCTCTTCTCGATAAACGACTGGAACTGGAGGTTGACCACATCGGTCGTAGAAGAGTCTCGGCTGCAGCGGAAAGAGCTGAGAAGCAAAAGATGCTGGTGGAGACTCGTAAGGAATCCAAGCAGAGGATCCAACAGATTGAGAAGAACCTGTGGGACCTGAGGCAGGCTAGGAAGACTCTCAGATGCTCTGCACAAGCAGCAGAGGAGGACAGTGAGGAGATCTTCACCGAACTGATTCAGTCCGTCAAGAGGAGACACTCCGAGGTGAAGGAACTGATCCAAACTCAGGAAAGAGCTGAACTGAGACTGGCGGAAGAGCTTGGGAAGAAACTGGAGAAGGAGATCACTGATCTGAGGAGGAGAGACGCCAAGCTGGAGATGCTTCTACGCTCAGAGGATCACGATGAGTTCCTCAAGAGTTTCCAGAGTTTCAAGAGTTCCAAGAGCTTCCAGTCACTCTCTGCTTCTTCTCAACCGACGCACTCATCCCAAATCCCAACCAGTCCACAGTTCTCCATGAAGAAACTGAAGAAGGCTGTTTCTGGAGTGATGGAACAAGTAGATCCCAAACTGCTCAAGTTCTCTGGAGGGTTTAGCTCATTTTCCAAGATGGCCACTCCTCTGCAGAAACCACAAAAGCCTTTACCGCCACCGAAACCGAAGATGAGAGAAGTCTTCCTGAAATTTTCCTGTCAGCTCACTCTAGATCCAAACACTGCGAACAGAAGTCTCGCTCTGTCTGAGAGGAACCGAAAAGTATCGGCTTTGCAGCAGCACCGTAAACTGCGATATCCCGATCATCCTGAGAGATTCGATCAAGTCCGGCAAGTTCTCTGCAGAGAAAGCCTGTGTGGACGCTCCTACTGGGAGGTCGAGATTAGAGCCAGCGATGTCAATATTGCAGTCGCTTATAAAAGCATCAGCAGGAAAGGAGAAGATCACAAGTCTGGATTTGGGTCTAATCATCAGTCCTGGAGTCTCTTCtactattcttcttcttctactggACCCAGTTTCTTCTTcagacacaataaaaaatatactgaaCTCCCAGCAGTCTCCAGATCCAGAagagtaggagtgtatgtggatcCCGGCGCAGGATTTCTCTCCTTCTACAGCGTCTCGGACACACTGACTCTTCTCCACAGAGTCCAAACCACCTTCACCCAGCCCCTCTATCCCGGGTTTGGGGTTTATGGTTGTGACGATGTTCTTCAGATATGTGATCATAATTAAACTTCAGGTAATAAACATCAGCCTCTATTCTGGACAGCTTTGCTTTGGTCAGGGGGCAGTAGAATGTAATGAGTGGGCATGTTGATAcatcatatttttaaagctaGAGCTAAAACTGATGTAGGAAGTAtgtatgaaaagaaaaaaatgcattataggGTTTCCTATAGTGTACGCTCACTGaatgaaacatttataaaatatataaaatacatgctAATACTACAAATTAAGCAGCAAAAGGGTTAAAAGCAAGTAACACTGAGCAACAAATCCCACAAATACCAGTTTAGCAAACGTTACCTTGTGGAAGTCAGccctagttaa

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202065 lncRNA upstream 5769 4114171 ~ 4115546 (+) True G149251
TU202059 lncRNA upstream 18446 4100946 ~ 4102869 (+) True G149247
TU202021 lncRNA upstream 29474 3980794 ~ 4091841 (+) True G149222
TU202044 lncRNA upstream 88122 4031287 ~ 4033193 (+) True G149239
TU202026 lncRNA upstream 111623 3991810 ~ 4009692 (+) True G149226
TU202074 lncRNA downstream 47674 4171084 ~ 4226395 (+) True G149260
TU202107 lncRNA downstream 161518 4284928 ~ 4341467 (+) True G149278
TU202135 lncRNA downstream 373834 4497244 ~ 4810026 (+) False G149302
TU202156 lncRNA downstream 374611 4498021 ~ 4502936 (+) False G149302
TU202170 lncRNA downstream 374611 4498021 ~ 4812714 (+) False G149302
XM_022678702.1 mRNA upstream 123256 3953403 ~ 3998059 (+) True LOC103047776
XM_022678703.1 mRNA upstream 123256 3953403 ~ 3998059 (+) False LOC103047776
XM_007243473.3 mRNA upstream 438794 3678996 ~ 3682521 (+) True pter
XM_007231100.3 mRNA upstream 488447 3585245 ~ 3632868 (+) False LOC103028887
XM_007231099.3 mRNA upstream 488447 3585246 ~ 3632868 (+) True LOC103028887
XM_022678716.1 mRNA downstream 146607 4270017 ~ 4286199 (+) True LOC111194481
XM_022678720.1 mRNA downstream 169073 4292483 ~ 4377412 (+) True LOC111194484
XM_022678717.1 mRNA downstream 261449 4384859 ~ 4386588 (+) True LOC111194482
XM_022678718.1 mRNA downstream 261449 4384859 ~ 4386588 (+) False LOC111194482
XM_022678719.1 mRNA downstream 261449 4384859 ~ 4386588 (+) False LOC111194482
TU202027 other upstream 111580 4004918 ~ 4009735 (+) False G149226
TU201123 other upstream 2006850 2112673 ~ 2114465 (+) True G148599
TU200918 other upstream 2915915 1200285 ~ 1205400 (+) False G148442
TU202053 other downstream 3539 4126949 ~ 4131384 (+) True G149243
TU202070 other downstream 35790 4159200 ~ 4160106 (+) True G149256
XR_002651093.1 other downstream 169073 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other downstream 189201 4312611 ~ 4386634 (+) False LOC111194484
TU202206 other downstream 382303 4505713 ~ 4510449 (+) False LOC103029581

Expression Profile